Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1648 ATGGCTTCAGAAGCTGAAATTTCTGAAATTTCTTCTTTATTTGAAAGAATGATCCGAAACAGAGACATGTCTCTGTTTTTACCCTTTATGCTAAGCCTTTCACAAACTTTAAACAACAGCGACCCAGATCATGAATCCGAAACCAATGAAGATTCCACTCCTCAAAGAATCATTTTTGTGAACCCTTTGACACAGAGTATCACTGTAATCGATGGAGCTTCAAGCATTGAAGAACTCTTTAACAACCTTGGAAGTTCTACAAAGAATGGTCAACCACCGGCTACGAAGGAGTCTATAGAAGCTATGGACAAGATTGAGATTGAAGAAGGTGATGGTGGTGAGTGTGTTGTTTGTTTGGAGGAATTTGAGGTTGGTGGGGTTGTGAAGGAGATGCCTTGTAAGCATAGGTTTCATGGAAAGTGTATTGAGAAGTGGTTAGGGATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTGTTGATCAGGAAGATGATGGTAAGAAAAGGGAGGAAGAAGAAGGTGGTGAGAGAAGAAGGGTTGGTGATGGTGGTGGTGGTAACGGTGAAGTTTGGGTTAGTTTTTCTATTAATAGGAGTAGGAGAAATCAAGATCAAGATTCTTCATCCAACCCTAGAGAAGATGATGATGATGAAGTTGAGAATTAA 669 0.4036 MASEAEISEISSLFERMIRNRDMSLFLPFMLSLSQTLNNSDPDHESETNEDSTPQRIIFVNPLTQSITVIDGASSIEELFNNLGSSTKNGQPPATKESIEAMDKIEIEEGDGGECVVCLEEFEVGGVVKEMPCKHRFHGKCIEKWLGIHGSCPVCRYQMPVDQEDDGKKREEEEGGERRRVGDGGGGNGEVWVSFSINRSRRNQDQDSSSNPREDDDDEVEN* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1648 222 MobiDBLite consensus disorder prediction 162 222 - -
Mtr5g1648 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 162 IPR013083 -
Mtr5g1648 222 SMART ring_2 115 155 IPR001841 -
Mtr5g1648 222 MobiDBLite consensus disorder prediction 162 184 - -
Mtr5g1648 222 CDD RING-H2_PA-TM-RING 114 156 - -
Mtr5g1648 222 PANTHER - 8 168 - -
Mtr5g1648 222 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Mtr5g1648 222 Pfam Ring finger domain 114 156 IPR001841 -
Mtr5g1648 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 168 - -
Mtr5g1648 222 SUPERFAMILY RING/U-box 99 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1648 Mtr-Chr5 18081897 18082821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1648 1 205 C3H Transcription Factor Family AT1G26800 50.239 1.84e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1648 - - lang:109356689 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1648 5 18081897 18082821 Mtr5g1648 5 18081897 18082821 ECH