Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1637 ATGTCTTCTCAGCAACGCCGTGTTGATCAGAAAATCTGGCAGTGCTGTGCAGGCAGTTCCGTTAAAATTCCAAAACTATATTCTCATGTTTACTACTTCCCATTAGGGCACTTAGAACACATATGTCCATCCCCAAACCCTAACACACTGTCCCATCTTGACCGTTCCCGTCCATTCATTCTCTGCACAGTCTCCGCGGTTGATCTACTCGCTGACCTTTGTACCGATGAAGTCTTCGTCAAACTACTCCTCACTCCTGTCACTAACAAAGGTGTTCACGAACCTCACTCTCTTGAGGTTCGTGAAGACAAAGATGATGACAAAAAGGTTGTTTCCTATTCCAAGACTCTCACCCCATCTGATGCTAACAATGGCGGTGCATTCTCTGTGCCAGTGGAATGCGCGAAATTAATCTTCCCGCCACTTGACCTCAATACTGAAAAGCCGTTTCAAGAACTCTCCATCAGTGACATTCACGGCAAAGTTTGGAAGTTTCGCCATGTTTACCGTGGGACTCCCTTGCGACATCTGCTTACCACTGATTGGAGTGAGTTCGTTGACAAGAAGAGACTAGTTGGCGGTGATTCCTTAATTTTCATGAAAGACTCAGATGGAAATATCTCAGTCGGGGTTCGCCGACAGACTAAGTTTGGTGGTGCTGCTAAGATAACAGAAAAATCGTTTACGGAGGCAGTGGAATTGGCGGATAAGAACTTGGCTTTTGAAGTTGTGTATTATCCAACGGCTAAAGGTTGGTGTAATTTTGTTGTTGATGCCAAAGTTGTGGAGGATGCAATGAATATTAGTTGGAGTCTTGGAGTGAGAATTGAACTTTCTTCGAAGAATTACGATTCTTCAAAGAGATGCTCAAAATTTGAGGGAACAATATCTGCTCTATCTGCTCCTAATTGTCCATGGCGGATGCTTGAGGTTAAATGGGATGAACCTAAAGTCTCGCAGGTTCCAGAGCGAGTCAGTCCTTGGGAGGTTGAAACTATTTCCGACATATTTGCACTGCATCCACAATTCCACCCGACAAAAAAGCTTAAAAAATCTGATCCAGATTCTGCTGCATTCAGTGATAAAAAGGGAGACTCCTTCATCCCAAATATAGAGGCTTTTTTGAAGATGGTCCCAAATATAGAGTTTAAACATTTCGTGATGACATCCTCTAATCAAACATTGTTGAACAATGATGCTTTTCTTGATAGCATGCAGGGCGCCAGGCACGGACTTTTTTCCACATCAACTTCTTCCAACTTTGGGAATGATAAAAGCAATGGTTTCCTTGGGAATAATTCTATGGCAGTGTCGAGTAATGTGTCAAGTGAGCCAAACACTGCAGCTCCTATATCTTTGGACTTGTCACCTCATAGCCATGATATTTCCAACTCTCGTGGGACAAAGTTTGCCGGTACTGACAGCAGCACCGAGAAAGTAAGTCCTGGTTCATTTATGCTATTTGGTAAAATCATAAAACCTGTTAGAAGCGATTTTCAAGAATTCGATATCAAGGGAAATGATGATTGTGAAGGCTCCAATGAAATTGAAGGCATCAAACTTGCACAAAAATAG 1575 0.4273 MSSQQRRVDQKIWQCCAGSSVKIPKLYSHVYYFPLGHLEHICPSPNPNTLSHLDRSRPFILCTVSAVDLLADLCTDEVFVKLLLTPVTNKGVHEPHSLEVREDKDDDKKVVSYSKTLTPSDANNGGAFSVPVECAKLIFPPLDLNTEKPFQELSISDIHGKVWKFRHVYRGTPLRHLLTTDWSEFVDKKRLVGGDSLIFMKDSDGNISVGVRRQTKFGGAAKITEKSFTEAVELADKNLAFEVVYYPTAKGWCNFVVDAKVVEDAMNISWSLGVRIELSSKNYDSSKRCSKFEGTISALSAPNCPWRMLEVKWDEPKVSQVPERVSPWEVETISDIFALHPQFHPTKKLKKSDPDSAAFSDKKGDSFIPNIEAFLKMVPNIEFKHFVMTSSNQTLLNNDAFLDSMQGARHGLFSTSTSSNFGNDKSNGFLGNNSMAVSSNVSSEPNTAAPISLDLSPHSHDISNSRGTKFAGTDSSTEKVSPGSFMLFGKIIKPVRSDFQEFDIKGNDDCEGSNEIEGIKLAQK* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1637 524 Gene3D - 270 337 - -
Mtr5g1637 524 Gene3D - 110 215 IPR015300 -
Mtr5g1637 524 SMART B3_2 113 215 IPR003340 GO:0003677
Mtr5g1637 524 PANTHER AUXIN RESPONSE FACTOR 221 512 - -
Mtr5g1637 524 PANTHER AUXIN RESPONSE FACTOR 5 220 - -
Mtr5g1637 524 Pfam B3 DNA binding domain 114 214 IPR003340 GO:0003677
Mtr5g1637 524 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 220 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g1637 524 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 221 512 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g1637 524 Pfam Auxin response factor 231 309 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr5g1637 524 CDD B3_DNA 112 213 IPR003340 GO:0003677
Mtr5g1637 524 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Mtr5g1637 524 SUPERFAMILY DNA-binding pseudobarrel domain 109 215 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1637 Mtr-Chr5 17899706 17901831 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1637 5 492 B3 DNA Binding Superfamily AT1G77850 36.996 1.94e-110 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g1637 B3 1.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1637 - - mtr:MTR_5g040880 1054.28