Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1631 ATGTCTCCTCAGCAACCTATCCGTGTTGATCCAAAAATCTGGCAGTGCTGCGCCGGCGCTGCCGTTAAAATTCCAAAACTAAATTCTCATGTTTACTACTTCCCATTAGGGCACTTAGAACACGTCTCTCCATCCCCAAACCCTAGCACACTCTCCCTTCTTGACCGTTCCCGTCAATTCATTCCCTGCACCGTCTCCACGGTTAATCTACTCGCTGACCCTGTTACCGATGAAGTGTTCGTCAAATTACTTCTCACTCCTGGTACTAATAACTGTGTCCACGAACCTCCTCCTGAGGTTCGTGAAGACCAACATGACGGGGTTAAGGTTGTTTCCTCTGGCAAAACTCTAACTCCGTCTGATGCTAATAACGGCGGTGCATTCTCAGTGCCTAGCGAATGCGCAAAATTAATCTTCCCGCCACTTGACCTCCAGGCCGAAAAGCCTTCTCAGAAACTCTCAGTCACTGACATTCACGGCAAAGAATGGAAGCTTCGCCACGTCTACCGTGGGACTCCCTTGCGACACCTGATCACCACCAATTGGAGTGAGTTTGTTGACGAGAAGAAACTGATTGGCGGCGACTCCTTAGTTTTCATGAAAAAATCAACTAGAACTGGAACCGAAACGATCTCTGTTGGAATCCACCGGCAGAAGTTTGGTGCTGCCACTAAAATAGCAGAAAAATCTGTTACCGAGGCTGTGGAATTGGCGGAGAAGAACATGGCTTTCGATGTTGTGTATTATCCTACTGCTGAAGGTTGGTGTGATTTTGTAGTTAATGCTAAGGTTGTGGAGGATGCCATGAAGAATAAATGGAATTCTGGATTGAGAATTAAACACTCTTTGAAGAAAGACAATTCTTCAAAGAGATGCTCAAATTTTGAGGGAACAATATCTGCTCTATCTGCTCCTAATCGTCCATGGCGCATGCTTGAGGTTAGGACTGCTAAAGATTCTGCCTTACATAATGATATAGAGAGAGACTCCTCCATTCCAAAGATAAAGTTTCATTCTTCAACGACGAGATCCTTCAATGAAGCATCGTTGAATAGCAATGCTTTGCTCCATGACACCGCATCAACTTCTTCCAACTGCAACACCAAAAAACTTAGTCCTGGTTCAATTATGTTATTTGGTCAGATCATACGTCCTGTTGGAAGTGATTTACACGATTCAGATATCAAAGGAGAAGATGGCGGGAAGGGCTGCAATGAAAATTGTCTTGTGTAG 1233 0.4477 MSPQQPIRVDPKIWQCCAGAAVKIPKLNSHVYYFPLGHLEHVSPSPNPSTLSLLDRSRQFIPCTVSTVNLLADPVTDEVFVKLLLTPGTNNCVHEPPPEVREDQHDGVKVVSSGKTLTPSDANNGGAFSVPSECAKLIFPPLDLQAEKPSQKLSVTDIHGKEWKLRHVYRGTPLRHLITTNWSEFVDEKKLIGGDSLVFMKKSTRTGTETISVGIHRQKFGAATKIAEKSVTEAVELAEKNMAFDVVYYPTAEGWCDFVVNAKVVEDAMKNKWNSGLRIKHSLKKDNSSKRCSNFEGTISALSAPNRPWRMLEVRTAKDSALHNDIERDSSIPKIKFHSSTTRSFNEASLNSNALLHDTASTSSNCNTKKLSPGSIMLFGQIIRPVGSDLHDSDIKGEDGGKGCNENCLV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1631 410 CDD B3_DNA 115 199 IPR003340 GO:0003677
Mtr5g1631 410 Gene3D - 113 218 IPR015300 -
Mtr5g1631 410 PANTHER AUXIN RESPONSE FACTOR 225 324 - -
Mtr5g1631 410 PANTHER AUXIN RESPONSE FACTOR 5 218 - -
Mtr5g1631 410 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 218 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g1631 410 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 225 324 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g1631 410 ProSiteProfiles B3 DNA-binding domain profile. 113 219 IPR003340 GO:0003677
Mtr5g1631 410 SMART B3_2 115 219 IPR003340 GO:0003677
Mtr5g1631 410 Pfam B3 DNA binding domain 115 217 IPR003340 GO:0003677
Mtr5g1631 410 SUPERFAMILY DNA-binding pseudobarrel domain 115 205 IPR015300 -
Mtr5g1631 410 Pfam Auxin response factor 234 312 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1631 Mtr-Chr5 17838578 17839958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1631 9 310 B3 DNA Binding Superfamily AT1G77850 42.319 2.77e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g1631 B3 4.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1631 - - mtr:MTR_5g040740 830.861