Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1629 ATGTTGAATATTGATGTAGTTGGAAACAAGAGAAGGAAGAGATGTGGGAGGGTTTTTAGGTTCAAGAATTTTGGGGAACAAGGGTACCCATTAATGTTTAATGGAGCATCATTTCGTGAGAATGTGAATGGTTTACTTGAATATGCAAATTTGGAAAGTAATTTAAAAATGGGAATGCCTATGTGGTCATTTCAACTTGAATTGAATCATCATCCACCTTTGTATATTTTGTTGTTTGTGATTGAAGAATCAATTGAGGCAGCATTGAATCGTCATTGCAATCATTGTCAATATGTTGGCTGGGGAAACCATTTCATTTGCAATAAGAAGTATCATTTCCTATTACCTTCAAAGGAGACACTAAGTAGCTGCACAAGCTGTGAAAACTGCTGTGATTCAAATGGTACAATGAATATTAGTGGTAAGTCCAACAAATTAATAGAATTAGAGGGACATATGATGCATGGTGTATTTCACTCTAATGGATTTGGGCATTTGCTATGTGTCAATGGATTGGAAACTGGTTCCAATTTGGGTGGTAACCAAATCATGGAGTTTTGGAATCGTTTGTGCAATGGATTACAAGCAAGGAAAGTGAGTTTGAATGACACATCACAAAAAAGAGGCATGGAACTAAGACTTGTGAATGGAATAGCATACAGTGAGCCCTGGTTTGGTCGTTGGGGATACAAATTTGGTCGAGGATGTTTTGGTGTAACACAATCAATGTACCAGAAAGCCATAGAAGCAATAAGAAGCATGCCACTATACTTACTCACACATCACATTGCAAATTCCAATCATGAAATCCCATTAATCTTCCAAAGGTACCAAACACTTTCTGATCACTCTCTTGTCACCCTTGGTGACTTATTTCACTACATGTTAGAGCTCAAGTCGCGGCTTCCCCGTGAAACATGCATTGGTTCCTTCAACACAAGCGCCTTAGTCGAAACAAATTGTCGTTGGTCCCCTAAAAGGATTGAAATGGCAACACGGGTCATTGTCGAGGCCTTAAAAAGAACTGAATTCAGGTGGATTTCAAGACAAGAAGTGAGAGATGCCGCGCGTGCTTATATTGGAGACACTGGTTTGTTGGATTTTGTTTTGAAGTCGCTAGGAAACCACGTTGTTGGAAACTATTTGGTTCGTCGAAGCTTGAATCCGGTTACAAAAGTGTTGGAGTATTGTTTAGAAGACATTTCTAATGTTTACCCTTGTCATGAAGGGTTGGTTATGAGTAGTAGTAGTAGTAATAAAGTTAAGGACAAGTACAAGATCACAAGGGGGCAACTTATGAAGGACATGATTTGTTTGTATAAGTATATACTTATTGACACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGGATAATTCTTGACACTAAACATCTTATCAAAGACTATGGAGAGGTTCCTTTGCAAGTTGAGTTAGGATCAAAAGAAAAATGCAATCTTTATTGTACAATTTTGTTAAGGAATGTTAACAATGTAGGCCATAATCATGAGTATTATTTGAACAAGGATATTCCAATGCCACCTTATGAATGTATCACATTAAAAAGTTGTGCTACAATTAATGACTTAAAGCTAGAAGTTGAAAGGAATTTTAGGGAAATCTATTGGGGGTTAAGGAGTTTTGTGGTGCAACCAAATGGGAATTTGATGAATGCAAAAGGGAATGAAATGGTTTTTGGGATGATTGAAGTGGGTGGAAAACTTGTACTTGAAGGTTGGCATGGTGATGAAATGGGAATCAATATGGTTGATCAAATATGTGAAAGGGATCCAAAGAAGGGAATTGTGGAGTGCATTTGTGGAACTAAAGAAAATGATGGTGAGAGAATGGTGTCTTGTGATATTTGTGAAATTTGGCAACATACTAGATGTGTTAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGCAAAAGGTGTGAGCAAGAAATTGTTATTTTCCCTTCTTTGCCATAA 2001 0.3713 MLNIDVVGNKRRKRCGRVFRFKNFGEQGYPLMFNGASFRENVNGLLEYANLESNLKMGMPMWSFQLELNHHPPLYILLFVIEESIEAALNRHCNHCQYVGWGNHFICNKKYHFLLPSKETLSSCTSCENCCDSNGTMNISGKSNKLIELEGHMMHGVFHSNGFGHLLCVNGLETGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANSNHEIPLIFQRYQTLSDHSLVTLGDLFHYMLELKSRLPRETCIGSFNTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVMSSSSSNKVKDKYKITRGQLMKDMICLYKYILIDTKPIIGSEFLSAIPLAARIILDTKHLIKDYGEVPLQVELGSKEKCNLYCTILLRNVNNVGHNHEYYLNKDIPMPPYECITLKSCATINDLKLEVERNFREIYWGLRSFVVQPNGNLMNAKGNEMVFGMIEVGGKLVLEGWHGDEMGINMVDQICERDPKKGIVECICGTKENDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVIFPSLP* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1629 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 659 IPR013083 -
Mtr5g1629 666 ProSiteProfiles Zinc finger PHD-type profile. 608 658 IPR019787 -
Mtr5g1629 666 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 666 - -
Mtr5g1629 666 SUPERFAMILY FYVE/PHD zinc finger 605 658 IPR011011 -
Mtr5g1629 666 CDD PHD_MMD1_like 610 655 - -
Mtr5g1629 666 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 666 - -
Mtr5g1629 666 SMART PHD_3 610 656 IPR001965 -
Mtr5g1629 666 ProSitePatterns Zinc finger PHD-type signature. 611 655 IPR019786 -
Mtr5g1629 666 Pfam PHD-finger 611 657 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1629 Mtr-Chr5 17813087 17817371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1629 7 666 PHD Transcription Factor Family AT5G22260 51.466 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr5g1629 PHD 3.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1629 - - mtr:MTR_5g040700 1390.17