Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1626 ATGAGCGATCACTTGGTAGTCATCGTTGACCAACTCGACCACCCAGTTGTTCCTGTTGACCAACAACCTGCCCACCTTCCTTCCGATCCTTCCCCATCGCCATCTCCTGCCACTGCCGATGCCGGATCATCTGGATCTGGCTCGGCAGTGGATCGTGATGGCGATGATTGCGGTGATGAGGAGGAGCCTCTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAGGAGGATAGTGTTTCCAACTTGGAGACTCCCTGTGCCTGTAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAACATTGGTGCAATGAGAAAGGAGACATCACTTGTGAGATCTGTCATCAGCCTTATCAATCTGGGTATACTGCCCCACCACCTCGCCCTGTTCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTTTTAGCGATTGCAGAGGCAGAACGTCAATTCCTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTCTACTTCTGCGGCATGCACTCTCTGTAACTGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTACTTCGAGCTGCTGGATTTCTCTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGCCGACAAAGACAGGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGTCTACACTTCGCCATAGCACCAGGACCTCCAGGACCTACAGTACAGCAGGAACAAGTGTAG 873 0.4983 MSDHLVVIVDQLDHPVVPVDQQPAHLPSDPSPSPSPATADAGSSGSGSAVDRDGDDCGDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRPVPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLHFAIAPGPPGPTVQQEQV* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1626 290 SMART ringv_2 69 116 IPR011016 GO:0008270
Mtr5g1626 290 CDD RING_CH-C4HC3_MARCH 70 116 - -
Mtr5g1626 290 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Mtr5g1626 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 281 - -
Mtr5g1626 290 Coils Coil 158 178 - -
Mtr5g1626 290 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Mtr5g1626 290 Pfam Protein of unknown function (DUF3675) 122 240 IPR022143 -
Mtr5g1626 290 SUPERFAMILY RING/U-box 68 120 - -
Mtr5g1626 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 126 IPR013083 -
Mtr5g1626 290 MobiDBLite consensus disorder prediction 10 60 - -
Mtr5g1626 290 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 281 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1626 Mtr-Chr5 17788598 17793576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1626 69 156 C3H Transcription Factor Family AT2G37950 30.769 4.07e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1626 - - gmx:100779674 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1626 5 17788598 17793576 Mtr5g1626 5 17788598 17793576 ECH