Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1621 ATGGCTCTTAGTACTGTGGTGGTAGTTTCGGGTGGTTTGTATTTTTCGAAATGTTGTGTTAAGTATGAATTTGACCTGATCATTAATGGTAAACATCTCAAGAACTTCTTTCATGTTAGGTGGTCTAAAATGAATGCTTTTGGTAGAAATTTAGATCATATAATTCTGCTGAATCTGAGGTTCAAAGCTAACCTTGATATGATTGGAGAACTAAATATTAAGAATGGATGGAACCATGCCGAGATTTCATTAGCAAAAAATGATGTGAAATGGAAAAGACTTCATGTACAGGAACAAAAAACAAACATGGAAGATATTCAAATTATCAATCCTGATGATGCAAAAGAAGGAAAAGAAAAACGTCATGCCTCCTCTTCCTCTACCATTGAACGATGGGCTTATGATGTTTTCCTCAGTTTTCGAGGAGAGGATACTCGAAATGGTTTTACCGGAAACCTTTATAAAGCTCTTTGTGGAAAAGGAATTAATACTTTCATAGATGATAAAAATCTTGGCAAAGGAGAAGAAATCACACCAGCCCTCATGATGGCAATCCAAGAATCAAGGATTGCAATTGTGATTTTCTCAGAAAACTATGCATCATCCACTTTTTGTTTGAAAGAACTTACAAAGATCATGGAGTGCATAAAACACAAGGGCAGGTACGAGTATGAGCTCATTGGGAAGATCGTTCAAGAGGTCTCTAAAAAGATTAATCATAGACCTTTACATGTTGCCAAATACCCTATTGGTTTAGAGTCTCGAGTGCAAAAAGTGAACTCACTTCTAGAAGTTGAATCAAATGAGGGGGTTCGCATGGTGGGGATTTATGGAATGGGTGGGTTAGGAAAAACAACTCTTGCATGTGCTGTATACAATTGCATTGCTGATCAATTTGATAGTCTTTGTTTTCTTGGTGATATTAGAGAAAATTCGAAGAAGCGTGGGTTGGTAGAACTACAGGATATGCTTCTTTTTGAATTAACTGGGGAGAAAGATATTAAGCTCTGCAGTTTAAATAAAGCAATTCCTATTATTGAAAGTAGGCTTCGTGGGAGAAAAATTCTATTGATTCTGGATGACATTGACAGTTTAGAGCAACTAAAAGCACTTGCCGGTGGACTTGAGTGGTTTGGTTCAGGAAGCAGAGTTATTATCACAACAAGGGACAAGCATTTGCTGCAGGTTTATGGGGTTGAAAGAGTCTATGAAGTAGAAGGATTGAAGCATGAAGAAGCCCTTGAATTGTTTGTTTGGAATGCTTTCAAATCAAAAGAAGTCGAGCCTAGTTATTTCGACATTGCAAAGAAAGTATTACTTTATTCTAAGGGTCTTCCATTGGCTATTGAAATAATAGGTTCTGACTTGTATGGAAAAACAATATTGGAATGGCAATCTGCTATAGATACTTATGAAAGAATTCCTCATGAAAATATTCAGGACATCCTTAGAGTAAGCTATGATGGCTTAAAAGAATTTGAAAAGGAAATCTTTTTAGACATCACTTGCTTTTTCAAAGGATACAAACTAAGTGATGTCATGAACATATTACATAGTGGCCGTGGCTACGCCCCAGACTATGCTGTCCAGGTCTTGATTGATAAGAGTCTAATAAAAATGAATGAATATCGTGTGAGGATACATGACATGATTGAAGATATGGGTAGAGAAATTGTGAGGCTGGAATCACCCTCGAAGCCAGGTGGCCGCAGTAGATTATGGTTCACCAAAGATATTCTTCATGTTCTCAAAGAGAACAAGGGATCTGATAAAACTGAGATCATTGTGCTAAACCTTCTCAAAGATAAAGAAGTTCAATGGGATGGAAATGCATTGAAGAATATGGAAAACCTCAAGATACTGGTAATAGAGAAAACTCGCTTTTCCAGAGGACCTAATCATCTTCCAAAAAGTTTAAGAGTGCTAAAATGGTTTGATTATCCTGAATCGTCATTGCCGGCTCATTATAATCCAAAGAAACTTGTCATACTTGACCTGTCTGACTCTACGGGACTTTTTACATTTGGCAATCAAATGATCATGGTATTGATATTTTGTCTGTTTTCTGAGTTTTAA 2076 0.3666 MALSTVVVVSGGLYFSKCCVKYEFDLIINGKHLKNFFHVRWSKMNAFGRNLDHIILLNLRFKANLDMIGELNIKNGWNHAEISLAKNDVKWKRLHVQEQKTNMEDIQIINPDDAKEGKEKRHASSSSTIERWAYDVFLSFRGEDTRNGFTGNLYKALCGKGINTFIDDKNLGKGEEITPALMMAIQESRIAIVIFSENYASSTFCLKELTKIMECIKHKGRYEYELIGKIVQEVSKKINHRPLHVAKYPIGLESRVQKVNSLLEVESNEGVRMVGIYGMGGLGKTTLACAVYNCIADQFDSLCFLGDIRENSKKRGLVELQDMLLFELTGEKDIKLCSLNKAIPIIESRLRGRKILLILDDIDSLEQLKALAGGLEWFGSGSRVIITTRDKHLLQVYGVERVYEVEGLKHEEALELFVWNAFKSKEVEPSYFDIAKKVLLYSKGLPLAIEIIGSDLYGKTILEWQSAIDTYERIPHENIQDILRVSYDGLKEFEKEIFLDITCFFKGYKLSDVMNILHSGRGYAPDYAVQVLIDKSLIKMNEYRVRIHDMIEDMGREIVRLESPSKPGGRSRLWFTKDILHVLKENKGSDKTEIIVLNLLKDKEVQWDGNALKNMENLKILVIEKTRFSRGPNHLPKSLRVLKWFDYPESSLPAHYNPKKLVILDLSDSTGLFTFGNQMIMVLIFCLFSEF* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1621 691 Gene3D - 128 222 IPR035897 -
Mtr5g1621 691 Pfam NB-ARC domain 254 488 IPR002182 GO:0043531
Mtr5g1621 691 Gene3D - 231 401 IPR027417 -
Mtr5g1621 691 PRINTS Disease resistance protein signature 273 288 - -
Mtr5g1621 691 PRINTS Disease resistance protein signature 349 363 - -
Mtr5g1621 691 PRINTS Disease resistance protein signature 442 456 - -
Mtr5g1621 691 PRINTS Disease resistance protein signature 656 672 - -
Mtr5g1621 691 Gene3D - 407 491 IPR042197 -
Mtr5g1621 691 SUPERFAMILY Toll/Interleukin receptor TIR domain 124 219 IPR035897 -
Mtr5g1621 691 CDD AAA 276 390 - -
Mtr5g1621 691 Pfam TIR domain 133 219 IPR000157 GO:0007165
Mtr5g1621 691 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 144 670 IPR044974 GO:0006952
Mtr5g1621 691 ProSiteProfiles TIR domain profile. 132 266 IPR000157 GO:0007165
Mtr5g1621 691 PANTHER ARCHAEAL ATPASE 144 670 - -
Mtr5g1621 691 SMART till_3 133 266 IPR000157 GO:0007165
Mtr5g1621 691 SUPERFAMILY "Winged helix" DNA-binding domain 478 584 IPR036390 -
Mtr5g1621 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 501 IPR027417 -
Mtr5g1621 691 SUPERFAMILY L domain-like 593 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1621 Mtr-Chr5 17722773 17727729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1621 250 669 WRKY Transcription Factor Family AT5G45050 33.034 3.45e-62 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1621 - - mtr:MTR_5g040490 976.852