Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1619 ATGTATTTGACACATTTTATAAAAAACACATTCCTTAGAAGGCTTTGCTACATCTTTTTCCTTTTCAAGAGTCATTTTGTTATGACTTCCATGAAAGAGTTGAAATCCCAGGCCTCCTCTTCCTCTACCAATGAATGGCGGGCTTATGATGTTTTCCTCAGTTTTCGAGGAGAGGATACTCGAAAGGGTTTTACCGGAAACCTTTATAAAGCTCTTTGTGGAAAAGGAATCGACACTTTCATAGATGACCAAGAGCTTAGGAAAGGAGAAGAAATCACACCAGCACTCATGATGGCAATCCAAGAATCAAGGATTGCAATTGTGATTTTTTCAGAAAACTATGCATCATCCACTTTCTGTTTGAAAGAACTTACAAAGATCATGGAGTGCATAAAACACAAGGGAAGGATGGTTTTACCAGTTTTTTATCATGTTGACCCTTGTATTGTGCGCCATCAGAAAGGGAGCTACGCAAAAGCATTGGCCGATCATGAAAGTAATAAAAAAATTGACAAAGCAAAGGTCAAACAGTGGAGGTTAGTTTTGCAAGAAGCAGCTAGTATATCAGGTTGGCATTTCGAACACGGGTACGAGTATGAATTCATTGAGAAGATCATTCAAAAGGTGTCTGAGAAGATTAATCGTAGACCTTTACATGTTGCTAAATACCCTGTTGGGTTAGAGTCTCGAGTGGAAAAAGTGAACTCGCTTCTAGAAGTTGAATCAAATGAGGGGGTTCACATGGTGGGGATTTATGGAATGGGTGGGTTAGGTAAAACAACACTTGCATGTGCTGTATACAATTGCATTGCTGATCAATTTGATAGTCTTTGTTTTCTTGCTAATGTTAGAGAAAATTCAATGAAGCATGGGTTGGTACATCTCCAGGAGATGCTTCTTCATGAATTAGGTGAGGAGAAAGATCATAAGTTGTGCAGTTTAAATAAAGGAGTTTCTATTATCAAAAGTAGGCTTCATGGAAAAAAAATTCTATTGATTTTGGATGATGTTAACAGTTTGGAGCAACTAAAAGCACTTGCTGGTGAACTTGACTGGTTTGGTTCGGGCAGCAGAGTTATTATAACAACAAGGGATAAGCATTTGTTGCATGTTTATCGTGTTGAAAGAGTCTATGAAGTAGAAGGACTGAATCGTAAAGAAGCCCTTCAGTTGTTTGGATGCAATGCTTTCAAAACACAAAAAATTGATCAAAGATACGAGGACATTTCAAAGAGAGTAGTACTTTATTCTAAGGGTCTTCCATTGGCTGTTGAAATAATAGGTTCTGACTTGTATGGTAAAACAATATTGGAGTGGGAATCTGCTTTAGATACTTATGCAAGAATTCCTCATGAAAATATTCAGGAAATCTTAAGAGTAAGCTATGATGGCTTAAAAGAATTTGAGAAGGAAATCTTTTTAGACCTTGCTTGCTTCTTCAAAGGAGCAAAGTTAAGTGATGTCAAGAACATACTATGTTGTGGTCGTGGCTTTTCCCCAGACTATGCTATCCAGGTGTTGATTGACAAGAGTCTGATAAAATTTGAAGACTATAGTGTCAAAATGCATGACATGATTGAAGATATGGGTAGAGAAATTGTGCGGCTGGAAGCACCCTCAAAGCCGGGTGAACGCAGTAGATTATGGTTCTCCAAAGATATTCTTCACGTTTTCAAAGAAAACAAGAGACCTTGGAGGCTTACAGTTGTAAGGAGCTTGCACGAATTAAGAAAGGCGAAGGTCGAGTGCGGAAAACAATGTCTTCAGATGTGA 1773 0.3818 MYLTHFIKNTFLRRLCYIFFLFKSHFVMTSMKELKSQASSSSTNEWRAYDVFLSFRGEDTRKGFTGNLYKALCGKGIDTFIDDQELRKGEEITPALMMAIQESRIAIVIFSENYASSTFCLKELTKIMECIKHKGRMVLPVFYHVDPCIVRHQKGSYAKALADHESNKKIDKAKVKQWRLVLQEAASISGWHFEHGYEYEFIEKIIQKVSEKINRRPLHVAKYPVGLESRVEKVNSLLEVESNEGVHMVGIYGMGGLGKTTLACAVYNCIADQFDSLCFLANVRENSMKHGLVHLQEMLLHELGEEKDHKLCSLNKGVSIIKSRLHGKKILLILDDVNSLEQLKALAGELDWFGSGSRVIITTRDKHLLHVYRVERVYEVEGLNRKEALQLFGCNAFKTQKIDQRYEDISKRVVLYSKGLPLAVEIIGSDLYGKTILEWESALDTYARIPHENIQEILRVSYDGLKEFEKEIFLDLACFFKGAKLSDVKNILCCGRGFSPDYAIQVLIDKSLIKFEDYSVKMHDMIEDMGREIVRLEAPSKPGERSRLWFSKDILHVFKENKRPWRLTVVRSLHELRKAKVECGKQCLQM* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1619 590 SUPERFAMILY "Winged helix" DNA-binding domain 453 558 IPR036390 -
Mtr5g1619 590 ProSiteProfiles TIR domain profile. 47 213 IPR000157 GO:0007165
Mtr5g1619 590 PANTHER ARCHAEAL ATPASE 58 563 - -
Mtr5g1619 590 Pfam NB-ARC domain 228 463 IPR002182 GO:0043531
Mtr5g1619 590 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 58 563 IPR044974 GO:0006952
Mtr5g1619 590 Pfam TIR domain 48 214 IPR000157 GO:0007165
Mtr5g1619 590 SUPERFAMILY Toll/Interleukin receptor TIR domain 39 191 IPR035897 -
Mtr5g1619 590 Gene3D - 382 466 IPR042197 -
Mtr5g1619 590 Gene3D - 210 377 IPR027417 -
Mtr5g1619 590 PRINTS Disease resistance protein signature 248 263 - -
Mtr5g1619 590 PRINTS Disease resistance protein signature 324 338 - -
Mtr5g1619 590 PRINTS Disease resistance protein signature 417 431 - -
Mtr5g1619 590 SMART till_3 48 188 IPR000157 GO:0007165
Mtr5g1619 590 Gene3D - 46 209 IPR035897 -
Mtr5g1619 590 CDD AAA 225 365 - -
Mtr5g1619 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1619 Mtr-Chr5 17711308 17723117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1619 225 549 WRKY Transcription Factor Family AT5G45050 36.503 2.26e-57 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1619 - - mtr:MTR_5g040490 872.078