Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1617 ATGGAAGAAAGAAATGATGGTGAAAAACTTGATGAAGTTATCTTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGGTTTTACCTAAAGAGAAAGGTTCAACAAAGGCCTCTATCAATTGAGCTCATTAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTTGCAAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACAGGGACAGATAAACCTATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTAAAGAAATCCTTAGTCTTTTACAAAGGTAGAGCTGCTAAAGGAATCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCATAGATCCACTTTCACCAAAGAAGTACTTAGAGAAAACCATTCCTGCTAATGAATCATGGGCTATCTGTAGAATATTCAAGAAAACAAATTCTACGGCTCAAAGAGCTTTGTCTCACTCTTGGGTTTCTTCCCTATCTGAAACAAGAACCTCTAATATGCTAACCAAAAATCAAGAAATCACCCAATTTTGTTCAAGCAACATCTCATTGACAAAGAACACATCCTTGGCCAACCACTTCTACACTAACAACAATGATAGCCAAAATTTTGATGAAGATGTTACCCCTTATAAATCCATTATTAGTCCATTACTACATGAAGATCTTAATACAAGCTTGATATTCTCATCATCATCTCCACTTGAAACATCTAACACTAATAGTGATATTATTTCCAAATCTACAATGGATGTTTCATCAATGTTGTTGAATATGTCATCATCATCCTCAATGCTTGGTGACTTTAGCAAGACATGTGATGAGGTTACAACTACAAATTTCATGAATGGTGGGTTGCAAGAGCAATTTAGTGACTACTCATTACCATTTGGTAATTACCAATATGATAATAATGCATTGGTTAAGGTACCTTATAATGTTAATATGAATGTGCCTCGTATTGATGAACAAGAATTGATGAATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTATTGATGTTCCCTCTAGTTATTCAACAACCAAGTGTTACACTTAA 1176 0.3622 MEERNDGEKLDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDKPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLIDPLSPKKYLEKTIPANESWAICRIFKKTNSTAQRALSHSWVSSLSETRTSNMLTKNQEITQFCSSNISLTKNTSLANHFYTNNNDSQNFDEDVTPYKSIISPLLHEDLNTSLIFSSSSPLETSNTNSDIISKSTMDVSSMLLNMSSSSSMLGDFSKTCDEVTTTNFMNGGLQEQFSDYSLPFGNYQYDNNALVKVPYNVNMNVPRIDEQELMNFNIGDAWKSNLLWDTSFCPIDVPSSYSTTKCYT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1617 391 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Mtr5g1617 391 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Mtr5g1617 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 389 - -
Mtr5g1617 391 PANTHER PROTEIN FEZ ISOFORM X1 1 389 - -
Mtr5g1617 391 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Mtr5g1617 391 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1617 Mtr-Chr5 17701668 17704476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1617 2 304 NAC Transcription Factor Family AT1G26870 56.386 3.34e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr5g1617 NAM 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1617 - - gmx:100783995 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1617 5 17701668 17704476 Mtr5g1617 5 17701668 17704476 ECH