Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1596 ATGGAATTGGAAGGTGATCATCATCAAAGTAATGGAATCCGAAGCAGACCCAATTTCCCTCTTCAGCTTTTAGAGAAAAAAGACAACAACATCCTAGATGTCTCCGAAGAACAAACTTGTACAACCACCGGAAACGATGGCTGTACTGCCATAATCTCATCAGACCAGCAGAAAAAGCCTCCGCCGAAGCGAGCTTCGACGAAAGACCGGCACACGAAGGTAGACGGACGAGGCCGCCGGATCCGTATGCCGGCGGCCTGTGCTGCTAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAATCAGACGGCGAGACGATTGAGTGGCTGCTTCAACAGGCAGAGCCAGCCGTCATCGCCGCCACCGGAACAGGAACAATTCCGGCCAACTTTACTTCACTTAATATATCTCTTAGAAGCTCAGGCTCAACCATGTCTGCGCCGTCTCACTATTTTCGAGGTAACTACTTTAACCCTAGCTCGTTCTCCTCCACGGCGGCTCAGCTTAGAAACCGGGCTGAATGGGATAGAACTATGAACATGAACATGAACATGAACATGAACGTTGTAGCTGATGATTCAAGAAGGAGTAGTAACTCTACCATGTTGGAAAATCCTTCTTCTTTATCAGCAATGTTGAATTTCAACAACGTGCAAAATGCTATTCTACAAGCAAAACAAGAGCTTCGGGAAGAAAACGCCGCTGCCACCGCCTCCGGTGGTGGCGGAGGATTTGAATTGTTAGGTTCAGATTCAGATGGAAGCATGGGAAGAAAAAGAAGGTCAGAGCAAGAATTATTATCACAAAATATGGGAAGTTATTTGTTACAATCAAATGTAGGGTCACTTCCTTCAAGTCATGCTTCAAATACGGCAGCGTTTTGGATGGTAACTGGTAATGGGAACCAAGGTGTTAATGTTAATGGTGGTAATGGAAATGATCCAATTTGGGCAATTCCTTCTGTTGGGAATAATGGTATGTATAGAGGAGCTATGACATCTCCTAATGGATTTCATTTCATGAATTTTGCTGCATCTCCAATGAATCTTATGCCAGGAAGTCAATTAGGTTCAGGAATCGTCGGCGGTGGTGGTGGAGGTATTTTAGCCGAAAGCAATCTGAGTATGCTTTCGGCTATGAATGCCTATAGGCAGATTTCGACGAATGGTATGTCAAATTCGTCGGGGCAACATCACGGCGGAGGTGGAGGAGGAGATGATGAACATGACTCAAGCAGTCAACATTCCTAA 1251 0.4588 MELEGDHHQSNGIRSRPNFPLQLLEKKDNNILDVSEEQTCTTTGNDGCTAIISSDQQKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSSFSSTAAQLRNRAEWDRTMNMNMNMNMNVVADDSRRSSNSTMLENPSSLSAMLNFNNVQNAILQAKQELREENAAATASGGGGGFELLGSDSDGSMGRKRRSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQGVNVNGGNGNDPIWAIPSVGNNGMYRGAMTSPNGFHFMNFAASPMNLMPGSQLGSGIVGGGGGGILAESNLSMLSAMNAYRQISTNGMSNSSGQHHGGGGGGDDEHDSSSQHS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1596 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 416 IPR005333 GO:0003700
Mtr5g1596 416 MobiDBLite consensus disorder prediction 233 264 - -
Mtr5g1596 416 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g1596 416 MobiDBLite consensus disorder prediction 39 75 - -
Mtr5g1596 416 MobiDBLite consensus disorder prediction 388 416 - -
Mtr5g1596 416 MobiDBLite consensus disorder prediction 61 75 - -
Mtr5g1596 416 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 9 416 - -
Mtr5g1596 416 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Mtr5g1596 416 Coils Coil 215 235 - -
Mtr5g1596 416 MobiDBLite consensus disorder prediction 39 60 - -
Mtr5g1596 416 MobiDBLite consensus disorder prediction 402 416 - -
Mtr5g1596 416 Pfam TCP family transcription factor 66 213 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1596 Mtr-Chr5 17339949 17341742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1596 265 415 TCP Transcription Factor Family AT1G69690 35.802 2.82e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Mtr5g1596 TCP 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1596 - - gmx:100809966 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1596 5 17339949 17341742 Mtr5g1596 5 17339949 17341742 ECH
Mtr5g1596 5 17339949 17341742 Mtr4g3921 4 52947652 52949811 PCT