Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1584 ATGTCTAGCAGAAGATCTCGTTCCAGACAATCCGGTGGTTCCTCTGAGATCACTGATGCTCAAATCACTGATCTCATTTCCAAGTTACAACAACTTATCCCCGAACTTCACGCTAGCCGCTCCAACAAGGTTTCAGCTACTAAGGTATTGCAAGAGACTTGCAACTACATAAAAAACTTGCATAGAGAAGTTGATGATTTAAGTGACAGATTGTCACAACTTTTGGCTTCTACAGATTCCAACAGTGCTCAAGCAGCTATTATTAGGAGCTTACTTATGTAA 282 0.4078 MSSRRSRSRQSGGSSEITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLASTDSNSAQAAIIRSLLM* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1584 93 Coils Coil 57 77 - -
Mtr5g1584 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mtr5g1584 93 Gene3D - 20 89 IPR036638 GO:0046983
Mtr5g1584 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Mtr5g1584 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Mtr5g1584 93 CDD bHLH_AtPRE_like 17 77 - -
Mtr5g1584 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Mtr5g1584 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1584 Mtr-Chr5 17137996 17139346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1584 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 3.40e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g1584 HLH 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1584 - - gmx:100804830 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1584 5 17137996 17139346 Mtr5g1584 5 17137996 17139346 ECH
Mtr5g1584 5 17137996 17139346 Mtr3g0948 3 14824982 14826514 ECH
Mtr5g1584 5 17137996 17139346 Mtr7g0161 7 2630061 2633118 ECH
Mtr5g1584 5 17137996 17139346 Mtr6g0277 6 3334846 3337859 ECH