Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1582 ATGCATGAGATGGCTTTTTTCCAAGCAAATTTCATGCTACAAACTCCTCATCACCATGATGATCATCATCAACCATCTTCACTGAACTCAATTCTACCTCAAGATTATCATGGGGGACCATCATTTCTAGGGAAGAGATGTATGTCATTTTCATCGGGGATTGAACTTGGAGAAGAAGCAAATATACCTGAGGAAGATTTATCTGATGATGGATCACAAGCTGGAGAGAAGAAGAGGAGGCTTAATATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAACTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTAACTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGGGCAAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATGTTCTTAAAAGACAATATGATGCTATTAAGTTAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAAGCTGAGATATTGGCATTGAAAAATAGAGAACCAACAGAATCAATCAACCTGAACAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAGAACAGTTCAGAAATCAAGTTGGATATGTCAAGAACACCAGCAAGTGATAGTCCTCTTTCTACACATCAACATACAACAAGCAGAACTTTCTTTCCACCATCTGCTAGGCCTTCTAGTGGAATTGCTCAGCTTTTCCAAACTTCTTCAAGGCCAGAAATTCAATGCCAAAAGATTGATCAAATGGTCAAAGAAGAAAGTTTAAGCAACATGTTTTGTGGTATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA 852 0.3838 MHEMAFFQANFMLQTPHHHDDHHQPSSLNSILPQDYHGGPSFLGKRCMSFSSGIELGEEANIPEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSSSNRSENSSEIKLDMSRTPASDSPLSTHQHTTSRTFFPPSARPSSGIAQLFQTSSRPEIQCQKIDQMVKEESLSNMFCGMDDQAGFWPWLEQQHFN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1582 283 MobiDBLite consensus disorder prediction 59 79 - -
Mtr5g1582 283 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Mtr5g1582 283 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Mtr5g1582 283 MobiDBLite consensus disorder prediction 180 232 - -
Mtr5g1582 283 Coils Coil 124 172 - -
Mtr5g1582 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 3 283 - -
Mtr5g1582 283 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Mtr5g1582 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 283 IPR045224 GO:0003700
Mtr5g1582 283 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Mtr5g1582 283 SUPERFAMILY Homeodomain-like 68 134 IPR009057 -
Mtr5g1582 283 MobiDBLite consensus disorder prediction 177 232 - -
Mtr5g1582 283 SMART HOX_1 75 136 IPR001356 GO:0003677
Mtr5g1582 283 Gene3D - 69 138 - -
Mtr5g1582 283 CDD homeodomain 77 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1582 Mtr-Chr5 17092321 17094717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1582 4 283 Homeobox Transcription Factor Family AT1G69780 62.500 8.04e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr5g1582 Homeodomain 1.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1582 5 17092321 17094717 Mtr5g1582 5 17092321 17094717 ECH
Mtr5g1582 5 17092321 17094717 Mtr8g1816 8 27282218 27284762 PCT