Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1580 ATGCAACAAGATCATATGAAGAAGCAGAAGCAGAAGCAGCTTCTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTCACGTGGACTCAAGAGGAGGATGATATATTGAGGGATCAAATTGGAATCCATGGAACTGAAAATTGGGCAATAATTGCTTCTAAATTCAAGGACAAGACTACAAGACAGTGTAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAAAAAGGAGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGAAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCCGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACATTTCATACACGAATTCAAATAACAAAAGGATTATTTTCCGAGATGAAGCGTCAGATTCTGCAGTAGATTATAAGAAGATGAGGAGGTCACATATCCCTGATGGTGCAGAAAAGGTCGGCTTCGCAGACAAATCACATAAACAAAATGAAACTTCAAGAGCACCATTGGCAGTTTTAGCACAAAACACTCATAATGCCAATAACTTGCCAGACCACAATCATGTCTGCAATGTGAAGTTTAGTGGTTATGCTCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCGAAGATAAACGCGTTGATGCAACAAGCCGAGCTACTAACTTCACTAGCACTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGATTCTTCAAGAGTTTATGAACCGAAACAAAGAATCAGATGTTTCTGGATATAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTATTGCAAGACTTGAAGAATAATAGTGAAGAAATTGAGCCATGTTGGAGGTATATGGAATTTTATGAAGACTCTCCAGAAAGTTCTGAACACAGTACAGGATCAACTACTCTGCCTCATTGTACTGGTGAGAATTTAGAACACTCACTGCATCAAGATAGTGGAACTGAACTGAAGTCTATACAAATTGAACATCAAAAGGAAATTGGAGGATGTGATCATGTGATTCTTTCTAGTGCAACTTTGGATCAAGATATATTCTCATCTTGTGAAGAACAGATAAACAATGATGGCATTGTTTGTTCCTTGTCAAGTGCAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTATGTTCAGATCCTTAGCTGCAGGAATTCCAAGTCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGATTCTCCATCCCTCAACCCAATCGCCAACCCCTCACAACCGCCACTCTGCAAAAGAGCCCTGCTACAAAGTTAA 1401 0.3876 MQQDHMKKQKQKQLLNEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNISYTNSNNKRIIFRDEASDSAVDYKKMRRSHIPDGAEKVGFADKSHKQNETSRAPLAVLAQNTHNANNLPDHNHVCNVKFSGYAQNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDVSGYKIPDLQLVDLKDLLQDLKNNSEEIEPCWRYMEFYEDSPESSEHSTGSTTLPHCTGENLEHSLHQDSGTELKSIQIEHQKEIGGCDHVILSSATLDQDIFSSCEEQINNDGIVCSLSSAEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLMKTLGMDSPSLNPIANPSQPPLCKRALLQS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1580 466 CDD SANT 81 122 IPR001005 -
Mtr5g1580 466 Gene3D - 80 151 - -
Mtr5g1580 466 Gene3D - 16 77 - -
Mtr5g1580 466 PANTHER MYB PROTEIN-RELATED 9 464 - -
Mtr5g1580 466 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
Mtr5g1580 466 PANTHER TRANSCRIPTION FACTOR MYB88 9 464 - -
Mtr5g1580 466 CDD SANT 28 72 IPR001005 -
Mtr5g1580 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Mtr5g1580 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Mtr5g1580 466 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Mtr5g1580 466 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
Mtr5g1580 466 Pfam Myb-like DNA-binding domain 29 89 - -
Mtr5g1580 466 SMART sant 25 74 IPR001005 -
Mtr5g1580 466 SMART sant 77 125 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1580 Mtr-Chr5 17035153 17041250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1580 2 316 MYB Transcription Factor Family AT2G02820 58.967 2.15e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g1580 Myb_DNA-bind_6 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1580 K09422 - gmx:100807667 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1580 5 17035153 17041250 Mtr5g1580 5 17035153 17041250 ECH
Mtr8g1779 8 26813138 26822228 Mtr5g1580 5 17035153 17041250 PCT