Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1578 ATGGGTAATTGTCTTGATTCTTCTGCTAAGGTTGATGCTGCTCAAAGCTCTAGATCCACTTCTGGAACCTCAAAAACTACTCCTTCTAGTTTAACAATTCCATCATACAGTGACAAAAGCAATTCCTCAAGTCTTCTTCCAACACCAAGATCTGAGGGTGAAATCTTATCTTCTCCCAATCTTAAAGCATTCTCATTCAATGAGCTGAAAAATGCCACGAGGAATTTTCGTCCCGATAGTCTTCTTGGTGAAGGCGGATTTGGTCATGTTTATAAGGGATGGATTGATGAACACACATTTACAGCTGCAAAACCCGGATCAGGAATGGTTGTTGCTGTAAAAAGACTTAAGCCTGAAGGTTATCAAGGACATAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTTCACCATCCTAATCTAGTAAAATTAATCGGTTACTGCTTGGAAGGAGAGAACAGGCTTTTGGTATATGAATTTATGCCTAAAGGGAGCTTAGAGAATCATCTTTTTAGACGAGGACCACAACCACTGTCTTGGTCAATAAGGATGAAAGTAGCTATCGGTGCTGCTAGAGGACTTTCTTTTCTTCACAATGCAAAATCTCAAGTCATATACCGTGATTTCAAAGCTTCAAACATCCTTTTAGACGCGGAGTTTAATTCTAAACTCTCTGATTTTGGCTTGGCTAAAGCGGGTCCTACCGGCGATAGAACTCATGTGTCTACTCAAGTCGTGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTGACGGCCAAGAGTGATGTATACAGCTTTGGAGTTGTTATGCTTGAACTTTTATCCGGAAGACGTGCCGTTGATAAAACAATAGCTGGCGTGGACCAGAATTTAGTAGACTGGGCAAAACCATATTTAGGCGATAAAAGAAGACTATTTCGGATCATGGATTCAAAATTAGAAGGCCAATATCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCACTACAATGCCTTAACAGAGAAGCTAAGGCAAGGCCTTCAATGACAGAGGTTTTAGCAACTCTAGAACAGATAGAAGCTCCTAAACATGCATCCCGGAATTCCTTATCGGAACATCATAGAGTTCATGCTCCGGTCAGAAGGTCTCCTGCACGAAACCGAACGCCTTCATATGTTACTCCTACTGCATCGCCATTGCCATCTGTCCGGCAATCTCCTCGTGCGCACTAG 1233 0.4258 MGNCLDSSAKVDAAQSSRSTSGTSKTTPSSLTIPSYSDKSNSSSLLPTPRSEGEILSSPNLKAFSFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEHTFTAAKPGSGMVVAVKRLKPEGYQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSIRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDRTHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVMLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNREAKARPSMTEVLATLEQIEAPKHASRNSLSEHHRVHAPVRRSPARNRTPSYVTPTASPLPSVRQSPRAH* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1578 410 Pfam Protein tyrosine and serine/threonine kinase 80 355 IPR001245 GO:0004672|GO:0006468
Mtr5g1578 410 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Mtr5g1578 410 MobiDBLite consensus disorder prediction 9 54 - -
Mtr5g1578 410 CDD STKc_IRAK 82 359 - -
Mtr5g1578 410 ProSiteProfiles Protein kinase domain profile. 76 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1578 410 Gene3D Transferase(Phosphotransferase) domain 1 162 381 - -
Mtr5g1578 410 SUPERFAMILY Protein kinase-like (PK-like) 46 356 IPR011009 -
Mtr5g1578 410 MobiDBLite consensus disorder prediction 363 410 - -
Mtr5g1578 410 MobiDBLite consensus disorder prediction 387 410 - -
Mtr5g1578 410 PANTHER OS01G0588500 PROTEIN-RELATED 10 408 - -
Mtr5g1578 410 Gene3D Phosphorylase Kinase; domain 1 52 161 - -
Mtr5g1578 410 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 10 408 - -
Mtr5g1578 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Mtr5g1578 410 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1578 Mtr-Chr5 17012300 17015852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1578 24 356 Glycoside Hydrolase AT3G07070 49.702 5.57e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr5g1578 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1578 - - gmx:100809778 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1578 5 17012300 17015852 Mtr5g1578 5 17012300 17015852 ECH
Mtr5g1578 5 17012300 17015852 Mtr4g3915 4 52898941 52902868 PCT