Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1566 ATGAAGATGTTGCAATTGCAACCACCACAGTCCTATACAACTACAAACCCATTTTCAGTCCCAACTCACTCTTTCATCATCAACACTCCCAAAAAATCCATTTTTTTACGTCGCGTGGGTCCCACTTTCTCCCTCACATGTCACCACCCTGAGCTTTTCCATCCCAAACCATTCCCTCCGCCTCAACGCCCTCAATCTTCTTCTTCTTCTTTCTCCTCTTCAGTTGGAGAATTACCAGCAAGGGTTCATGTTAGTCGTTCAGTTTACAAAGGGAAAGCTGTGCTCGTTGTGTCTCCTGTACTTCCAAAATTCACTTCATCGGATTCAGGGACATTCAAGATATCTAAAGAAGGTTTGATGTTGCTACAGTTTGTTCCTTCTGCCGGTTTTCGCCAATATGATTGGAACAGAAAGCAGGTGTTTTCACTATCTGTGGATGAAATGGGAAATCTAATTAATCTTGGTGCAAGGGAGTCTTGTGAAATTTTTCACGATCCTTTTATGGGAAGAAGTGATGAAGGTAAAGTGAGAAAAGTTTTAAAGGTGGAGCCACTTCACGACGGTTCCGGTCACATGTTTAAACTAAGTGTCCAAAACCAGCTCAAGAACATCGATGAGAACATATTTATCCCTGTCACAAAAGCGGAATTTGCAGTTTTCAATTCACTTTTCAGTTTTATCATGCCATATCTCTTAGGTTGGAATGCCTTTGCCGACTCCATAAAGCCAGAAGTAAATATTGCAAACCCAAGAAGAAGAGAAGAAGACTTTGAATGGAACAGATAG 786 0.4135 MKMLQLQPPQSYTTTNPFSVPTHSFIINTPKKSIFLRRVGPTFSLTCHHPELFHPKPFPPPQRPQSSSSSFSSSVGELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQVFSLSVDEMGNLINLGARESCEIFHDPFMGRSDEGKVRKVLKVEPLHDGSGHMFKLSVQNQLKNIDENIFIPVTKAEFAVFNSLFSFIMPYLLGWNAFADSIKPEVNIANPRRREEDFEWNR* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1566 261 Gene3D Transcriptional Coactivator Pc4; Chain A 75 251 IPR009044 GO:0003677|GO:0006355
Mtr5g1566 261 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 40 261 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mtr5g1566 261 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 40 261 - -
Mtr5g1566 261 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mtr5g1566 261 SUPERFAMILY ssDNA-binding transcriptional regulator domain 81 259 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1566 Mtr-Chr5 16853316 16858605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1566 11 261 Whirly Transcription Factor Family AT1G14410 56.471 1.15e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Mtr5g1566 Whirly 4e-56 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1566 - - lang:109355868 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1566 5 16853316 16858605 Mtr5g1566 5 16853316 16858605 ECH
Mtr5g1566 5 16853316 16858605 Mtr8g1787 8 26910114 26914094 PCT