Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1563 ATGGCAAAATTGTACCATCTCTTCCTTTTGACATGTTTGGTGGTAACAATATCTACATTAGTGCATGCTAATGTCAAAGAGGACAAAGCATACTGGGATAGGATATTACCGACGCTTAATACTACATATTGGCAGAAAAAAGCATCAATTGCTGCGAAGGCAAACGACAAAGCTTATACTCCTGACCCATATGCAGTCTCCGGAAATCTGTCTTCTACTGTTAGCGAAATGATAATTGGTGGCATTAACGGAAGAAGGAATTTGGTGGGGTTGGGCAATAGTTCATGCATGGCCACAAACCCCATTGATAGGTGTTGGAGGTGTGATCCTAACTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACTACTGGTGGAAAAGACGGTCCTATCTATGTGGTAACTGACCCCTCAGATAGTGACTTGGTGAATCCACGTCCTGGTACCCTTAGGCATGCAGTTACAAGAAATGGGCCTTTGTGGATCATCTTCGCTCGTAGCATGAAGATTAGGCTCAACCAGGAGCTCATAATGGCAGGTAACAAGACCATTGATGGACGAGGAGCTGATGTTACCATTGCTAATGGTGCTGGTATTACTATCCAGTTCATCGAGAATGTGATCATCCATGGGATCAAAATTTATGACATTATGGTTGGAAGTGGTGGACTTGTTAGAGATAGTGAGGACCATTATGGTCTAAGGACTATTAGTGATGGTGATGGAATTTCAATTTTTGGCTCAAGCCATATTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATGGGATCCACTGCTATTACCATCTCCAATAGCCATTTCACAGATCACAACGAGGTAATGTTGTTTGGTGCAAGTGATACTTATGACGGTGATCAGAAAATGCAGATCACGGTTGTATTCAATCGCTTTGGTAAGAAATTAATTCAAAGGATGCCAAGGTGTAGATTTGGTTTTATCCATGTGCTTAACAATTTCTACAATCGCTGGGAAATGTATGCCATTGGTGGCACCATGCATCCTACCATTATTAGTGAGGGTAACAAATTCATAGCCCCTAACAATGGCCATGCTAAAGAGCTACTGGTTGCATCATTTACAAAGAAATCTAAAGGAGTTCCCTATAAAATACTATTTTGGTTTTTCATTGTACTTATAACAAAGAGGACGTTAGTACCAGAGGCAGAGTGGAAAACCTGGCAATGGAGATCAATCAACGACTTGTACCTGAACGGAGCATTTTTCAGACAAAGCGGAGCTGAGCTGATTAACAGACCATTCTCAAATAAGGACATGATCAAAGCTAAGCCTGGATCTTATGTTGGAAGGCTTACTCGTTATTCTCGCAGCCTTAGATGCAGGGTGGGGAAGCCTTGTTAG 1425 0.4211 MAKLYHLFLLTCLVVTISTLVHANVKEDKAYWDRILPTLNTTYWQKKASIAAKANDKAYTPDPYAVSGNLSSTVSEMIIGGINGRRNLVGLGNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDPSDSDLVNPRPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGSSHIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDTYDGDQKMQITVVFNRFGKKLIQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIAPNNGHAKELLVASFTKKSKGVPYKILFWFFIVLITKRTLVPEAEWKTWQWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCRVGKPC* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1563 474 PANTHER PECTATE LYASE 18-RELATED 6 474 IPR045032 GO:0030570
Mtr5g1563 474 Pfam Pectate lyase, N terminus 43 88 IPR007524 GO:0030570
Mtr5g1563 474 Pfam Pectate lyase 185 365 IPR002022 -
Mtr5g1563 474 Gene3D - 99 466 IPR012334 -
Mtr5g1563 474 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Mtr5g1563 474 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Mtr5g1563 474 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Mtr5g1563 474 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Mtr5g1563 474 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Mtr5g1563 474 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Mtr5g1563 474 PANTHER PECTATE LYASE 6 474 - -
Mtr5g1563 474 SUPERFAMILY Pectin lyase-like 100 462 IPR011050 -
Mtr5g1563 474 SMART amb_all 174 371 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1563 Mtr-Chr5 16826320 16828456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1563 42 474 Polysaccharide Lyase AT1G14420 56.125 2.62e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1563 K01728 - gmx:100810857 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1563 5 16826320 16828456 Mtr5g1563 5 16826320 16828456 ECH
Mtr5g1563 5 16826320 16828456 Mtr4g3894 4 52696723 52698281 ECH
Mtr5g1563 5 16826320 16828456 Mtr7g0126 7 2276301 2278222 ECH
Mtr5g1563 5 16826320 16828456 Mtr6g0264 6 3153005 3154908 ECH