Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1562 ATGGCAAAATTGTACCCTATCTTCCTTTTGACATGTTTGGTGGTAACAATATCTACATTAGTACATGCTAATGTCAAAGAGGACAAAGCATACTGGGATAGGATAGCACCGGTCCTTAATACGACATATTGGCAGCAAAAAGCTTCAGCTGCTGCAATGAAAAACGACAAAGCTTATACTCCTGACCCATATGCAGTCTCTGGAAACCTGAGTCATAGTGTTAGCGAAATGATAATTGGCAACCAAGGAAGAAGGAATTTGGCCGGGGGTAAAGCACGTGGTCCATGCATGGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGATCCTAACTGGGCAAACAACCGCCAGAAGCTTGCAGATTGTGTGAAAGGTTTCGGAAGGAAGACTACTGGTGGAAAAGGCGGTCCTATCTATGTGGTAACAGACCCCTCAGATAGTGACATGGTGAATCCACGTCCTGGTACCCTTAGATTCGGAGTTACAAGAAATGGGCCTTTGTGGATCACCTTCGCTCGTAGCATGACCATTAGGCTCAACCAGGAGCTCATAATGACAAGTCACAAGACCATTGATGGAAGAGGAGCTGATGTTACCATTGCTAGTGGTGCTGGTATTACTATCCAGTTCATCGAGAATGTGATCATCCATGGAATCAAAATTTTTGACATCGTGGTTGGAAGTGGTGGACTTATTAGAGATGGTCAGGACCATTTTGGTCAAAGGACTATGAGTGATGGTGATGGAATTTCAATTTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGTAGAGATGGACTAGTTGATGCCATTATGGGATCCACTGCTATTACCATCTCCAATAGCCATTTCACAGATCACAACGAGGTGATGTTGTTTGGTGCAAGTGATGGCTATGGCGGTGATGAGAAAATGCAGATCACAGTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGTAGATTTGGTTTTATCCATGTGCTTAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGCAGCATGCATCCTACCATTATCAGTGAGGGTAACCGATTCATAGCCCCTAACAATGGCCATGCTAAAGAGATAACAAAGAGGGAGTACGTAGACGAGTCAGTGTGGAAATCCTGGCAATGGAGATCAATCAACGACGTGTACCTGAACGGAGCATTTTTCAGACAAGGAGGACCTGAGTTGAAAGACAGACCATTCTCAAGAAAGGACATGATCAAATCTAGGCCCGGAACTTATGTTGGAAGGCTTACTCGTTATTCTGGAAGCCTTAGATGCATAGTGGGGAAACCTTGTTAG 1350 0.4415 MAKLYPIFLLTCLVVTISTLVHANVKEDKAYWDRIAPVLNTTYWQQKASAAAMKNDKAYTPDPYAVSGNLSHSVSEMIIGNQGRRNLAGGKARGPCMATNPIDRCWRCDPNWANNRQKLADCVKGFGRKTTGGKGGPIYVVTDPSDSDMVNPRPGTLRFGVTRNGPLWITFARSMTIRLNQELIMTSHKTIDGRGADVTIASGAGITIQFIENVIIHGIKIFDIVVGSGGLIRDGQDHFGQRTMSDGDGISIFGSSNIWIDHVSMRNCRDGLVDAIMGSTAITISNSHFTDHNEVMLFGASDGYGGDEKMQITVAFNHFGKRLIQRMPRCRFGFIHVLNNDYTHWEMYAIGGSMHPTIISEGNRFIAPNNGHAKEITKREYVDESVWKSWQWRSINDVYLNGAFFRQGGPELKDRPFSRKDMIKSRPGTYVGRLTRYSGSLRCIVGKPC* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1562 449 Gene3D - 99 442 IPR012334 -
Mtr5g1562 449 Pfam Pectate lyase, N terminus 43 87 IPR007524 GO:0030570
Mtr5g1562 449 SUPERFAMILY Pectin lyase-like 100 439 IPR011050 -
Mtr5g1562 449 Pfam Pectate lyase 184 365 IPR002022 -
Mtr5g1562 449 PANTHER PECTATE LYASE 7 449 - -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Mtr5g1562 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Mtr5g1562 449 SMART amb_all 174 371 IPR002022 -
Mtr5g1562 449 PANTHER PECTATE LYASE 18-RELATED 7 449 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1562 Mtr-Chr5 16821982 16824090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1562 42 449 Polysaccharide Lyase AT1G14420 60.613 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1562 K01728 - gmx:100796307 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1562 5 16821982 16824090 Mtr5g1562 5 16821982 16824090 ECH