Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1559 ATGGGGTTGTTGGGTTCTGATAATGTTAAAATGGTGGAGTCTTGGGATATGTCTAAATCAAAGGGGAGTAAGAAGATGAAGAAGGATAAAGAGAATGAGGATGTGATTGATGCGGGAAAAACAAAAACTGGGTGTTGGGTTGGGTTGAGATTCATTGGTAGCTGCATTTCTTCAAGATCCAAAGTTGATAGCTCAGTCAGTGGCAGTGGCACAAGTACACATTATGCTGAAAGTAAATCAACTAATGATACAAGTAGAGGCCAACGAACTGCTCCAGTAATCTCTTCTACAACCACTAGTAACGCAGAAAGCAATTCCTCAACTACTAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCTCTTTCAATGAACTTAAGTTGGCAACAAGAAATTTCCGGCCTGAGAGTTTTCTTGGCGAAGGTGGGTTTGGTTGTGTTTTCAAAGGTTGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACAGTTGCTGTAAAAACCCTTAACCACGATGGGCTTCAGGGTCATAAAGAATGGCTGGCAGAGGTGAATTTTCTTGGAGATCTAGTTCATCAAAACCTTGTTAAACTCATAGGTTACTGCATTGAAGATGATCAAAGGCTGCTAGTGTATGAGTTCATGCCTCGGGGAAGCCTGGAAAATCACTTATTTAGGAGATCCATGCCTCTTCCATGGTCCATTAGGATGAAAATTGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCACGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCGAACATTCTATTAGATGCAGACTACAATGCTAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGTCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACATATGGTTACGCAGCACCAGAATATGTCATGACAGGTCATCTTACGTCAAAAAGTGACGTGTACAGTTTTGGAGTCGTACTACTTGAGATGATATCCGGCAGAAGATCTATGGACAAACACCGACCCAACGGCGAACATAACCTTGTCGAATGGGCTCGACCACATCTAGGAGAGAGAAGAAGGTTCTACCGGTTGATAGACCCTCGTCTTGAAGGTCACTTTTCCGTAAAAGGAGCTCAGAAAGCCGCTCAGCTAGCTCATCACTGCCTAAGCAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTTGTCGAAGCTCTAATGCCTCTACCAAACCTAAAGGACATGGCAAGCTCGTCGTACTATTTCCAATCAATGCAAGCCGAGCGGTTTGGAGCGAGTCCAAATTCTAGAAGTGTGCATGCACAAGGAGCGTCGCTTGCTCGCAACGGACAGCAGAGAAGGAGCCTTTCGATACCGAACGGTGCACATGTATCCCCATATCACCATAAGTATCCTCAACAATCACCTAAACCTAATGTCAAAGCATAG 1479 0.4395 MGLLGSDNVKMVESWDMSKSKGSKKMKKDKENEDVIDAGKTKTGCWVGLRFIGSCISSRSKVDSSVSGSGTSTHYAESKSTNDTSRGQRTAPVISSTTTSNAESNSSTTKLEEELKIASRLRKFSFNELKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMISGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSVKGAQKAAQLAHHCLSRDPKARPLMSEVVEALMPLPNLKDMASSSYYFQSMQAERFGASPNSRSVHAQGASLARNGQQRRSLSIPNGAHVSPYHHKYPQQSPKPNVKA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1559 492 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 66 482 - -
Mtr5g1559 492 SUPERFAMILY Protein kinase-like (PK-like) 122 438 IPR011009 -
Mtr5g1559 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Mtr5g1559 492 MobiDBLite consensus disorder prediction 60 108 - -
Mtr5g1559 492 ProSiteProfiles Protein kinase domain profile. 136 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1559 492 MobiDBLite consensus disorder prediction 443 492 - -
Mtr5g1559 492 Pfam Protein tyrosine and serine/threonine kinase 141 416 IPR001245 GO:0004672|GO:0006468
Mtr5g1559 492 Gene3D Transferase(Phosphotransferase) domain 1 222 436 - -
Mtr5g1559 492 MobiDBLite consensus disorder prediction 443 469 - -
Mtr5g1559 492 PANTHER OS01G0588500 PROTEIN-RELATED 66 482 - -
Mtr5g1559 492 MobiDBLite consensus disorder prediction 60 111 - -
Mtr5g1559 492 CDD STKc_IRAK 142 419 - -
Mtr5g1559 492 ProSitePatterns Protein kinases ATP-binding region signature. 142 174 IPR017441 GO:0005524
Mtr5g1559 492 Gene3D Phosphorylase Kinase; domain 1 110 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1559 Mtr-Chr5 16798249 16802467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1559 99 416 Glycoside Hydrolase AT3G07070 56.075 1.89e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr5g1559 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1559 - - gmx:100787151 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1559 5 16798249 16802467 Mtr5g1559 5 16798249 16802467 ECH