Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1556 ATGGAATCAATAAAGAAATCGTTCGACGAATTTTACTCACACTACGCGCGAGAATCACTCGAAGAATTATCTGAAGAAATACCATTCACAATCACCGACCCATCACTTTCAAACCACCCAATAATCTTCGCTAGCCACGCGTTTCTCAACATCACTGGCTTCACGCGCGACGAAGTTCTTGGTAGAAGTGGTTCCATGTTTCAAGGTTCAGCGACATGTCGTAGGTCGGTGATGGAAATTCGTGAAGCTGTTAGGGAAGAAAGAGAAACGAACGTTGTTTTGGTTAATTATAGAAAAAACGGCACGCCGTTTTGGGTTTTCTTAACTGTTTCTCCTGTTTTTTGTGTCAAAAGTGGTGCTGTTGTTCATTTTGTTGCTGTTCAAGTTCCGTTGAAATTAAGGGTTTATGGTGGTGGTGGTTCTGTTGTGGTGAATCATGATTTTATGTTTCGGTGTTGTCGGAAAGAGGTTTGTTCGGATAGTTTGGTTGAACTTGATCGTGTTTCTTCCAGGAATCAAGTGTTGGATTTGGAACATGATGATGATGATGTCACTGATTTGGAGAGTGAAGAGCCACGCGAGGCAAGTGATGATGAAAGGAGAAGTGCTGTGACTGCCATGGACAATATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACGGGAAGATTGGTGTGTAGAAAGAGATGCAGCAATCCTGCCTTTCCTCGCAGAACTAATCCACATTTACCAGACATGCCTATTGTTTATGCCAGTGATGCCTTCATGAAATTGACAGGTTATACGAGAGATGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGACGACTCAGCTCTACAACTGATAAGGGAGAGCATCAAAACTGAAAAACTATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATATCACCTGTTCGGGATGCTACTGGAAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGCCTATAAAATCGAGGAATATAGACAGTGTTGGAAACCTGATATGAAACAGCTTAGTGTGGTTGGTGCAGTCAAGGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGTTCATCAAAGACATAG 1134 0.4215 MESIKKSFDEFYSHYARESLEELSEEIPFTITDPSLSNHPIIFASHAFLNITGFTRDEVLGRSGSMFQGSATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVFLTVSPVFCVKSGAVVHFVAVQVPLKLRVYGGGGSVVVNHDFMFRCCRKEVCSDSLVELDRVSSRNQVLDLEHDDDDVTDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSNPAFPRRTNPHLPDMPIVYASDAFMKLTGYTRDEVLGRNCRFLGGRNTDDSALQLIRESIKTEKLCTVRILNYRKDKSSFWNLLHISPVRDATGKVAYFVGVQIEDAYKIEEYRQCWKPDMKQLSVVGAVKVAVRSLSMSAGSSKT* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1556 377 SUPERFAMILY PYP-like sensor domain (PAS domain) 244 334 IPR035965 -
Mtr5g1556 377 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 127 IPR035965 -
Mtr5g1556 377 MobiDBLite consensus disorder prediction 179 202 - -
Mtr5g1556 377 SMART pac_2 298 338 IPR001610 -
Mtr5g1556 377 SMART pac_2 91 134 IPR001610 -
Mtr5g1556 377 CDD PAS 244 333 IPR000014 -
Mtr5g1556 377 ProSiteProfiles PAS repeat profile. 248 270 IPR000014 -
Mtr5g1556 377 ProSiteProfiles PAS repeat profile. 16 63 IPR000014 -
Mtr5g1556 377 MobiDBLite consensus disorder prediction 179 193 - -
Mtr5g1556 377 PANTHER PROTEIN TWIN LOV 1 4 375 - -
Mtr5g1556 377 Gene3D PAS domain 28 136 - -
Mtr5g1556 377 Gene3D PAS domain 239 370 - -
Mtr5g1556 377 CDD PAS 41 114 IPR000014 -
Mtr5g1556 377 PANTHER PROTEIN TWIN LOV 1 4 375 - -
Mtr5g1556 377 TIGRFAM sensory_box: PAS domain S-box protein 248 343 IPR000014 -
Mtr5g1556 377 TIGRFAM sensory_box: PAS domain S-box protein 40 117 IPR000014 -
Mtr5g1556 377 Pfam PAS domain 244 334 IPR000014 -
Mtr5g1556 377 Pfam PAS domain 37 128 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1556 Mtr-Chr5 16760047 16765982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1556 239 368 AGC Kinase Gene Family AT5G58140 43.382 1.34e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1556 - - gmx:100799855 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1556 5 16760047 16765982 Mtr5g1556 5 16760047 16765982 ECH