Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1550 ATGAGTCGCAAGAGAGAGAATCCCTCCTTTTCCCGCCACGACTTCAAACGCCGTCGTCCACTTCCGCCGCCGCCGGAAGAAGATAAACCCACCAAGCGCCCAACACCGCCGTCTGCGGTGGTCATCATGGGTCTCCCTCTTGACTGCTCCGTCCTCGATCTCAAGTCTCGATTTGAGATCTACGGCTCCATCTCCCGCATTCGTATCGACCGTGACGCCGTCGGTTACATCACTTACCGGACTAAAGACTCCGCAGACGCCGCCATCGCCGCGGGTCATGATCCTTCGTTTGGAGTCACTGTTAATTCTAAAAAGGTTCAGGTATTGTGGGCAACAGATCCTCTAGCAATGTGGAGGGAAGGAGTTGGTAAGAACAAGGATAACGTGTCTATGTCAAAGCTTGTGAGAGCTGAGGCACCTCTGAGGAGGCATGGAAGAGGTAATAGACTTGCTTCAGCTATAGGGAAAACCAAAAGTAGTGAGGATGGTTCTGGTAGCTCAGTTCTTGAAGTTCCTTTCAAGGGCAGAGAAATTGTTGCTTATGATGATATCTTGTAA 558 0.509 MSRKRENPSFSRHDFKRRRPLPPPPEEDKPTKRPTPPSAVVIMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRTKDSADAAIAAGHDPSFGVTVNSKKVQVLWATDPLAMWREGVGKNKDNVSMSKLVRAEAPLRRHGRGNRLASAIGKTKSSEDGSGSSVLEVPFKGREIVAYDDIL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1550 185 Gene3D - 1 115 IPR012677 -
Mtr5g1550 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Mtr5g1550 185 SUPERFAMILY RNA-binding domain, RBD 22 119 IPR035979 GO:0003676
Mtr5g1550 185 SMART rrm1_1 39 109 IPR000504 GO:0003723
Mtr5g1550 185 CDD RRM_SF 40 108 - -
Mtr5g1550 185 MobiDBLite consensus disorder prediction 1 38 - -
Mtr5g1550 185 MobiDBLite consensus disorder prediction 1 33 - -
Mtr5g1550 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1550 1 185 Homeobox Transcription Factor Family AT1G27050 52.195 8.02e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1550 - - gmx:106797175 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1550 5 16627705 16629773 Mtr5g1550 5 16627705 16629773 ECH