Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1539 ATGGGTAATCACGATTACTACAAAACTCTAAAGGTTAAGCGCGATGCAACCCTAGAAGATTTGAATGATTCATATAATAATTTAGTTATGAAATGGCACCCAGATAAGATTAACCAATACCCTTCAAGGAACCCTTCAAGAAAACAAGAGTTTGAGGCAAAGTTTAAGAGAATTAGTGAAGCTTATGAAGTTCTTAGTGATCCTAAGAAGCGTCAGATCTATGATCGCTCTGGTCAATATCCTGTGAATTTGGAAAATGGTGGTGGGAGTAATATGGAGGTTGATGAAGGTGTTGGAGTTGTTGAGACTGATTTTTTATGTAGCCTTGAGGAGCTTTATAAGGGTTGCAAGAAGAAGGTGAACGTTGTTAGGGATGTTCCTGATGAATTTGGGAAGTTGAAGAGTGAAGAAGAAATCTTGAAGATACATATTAAACCTGGTTGGAAGAAGGGCACAAAAATCACTTTTCCTGGAAAAGGAAGCCAACAACCCGGATCTGCACCATCTGATGTAATTTTTGTGGTGAATGAGAGACCACATCCTATATTCAAGAGGGACGGAAAAGATTTGATAATGACCGAAAAGATATCACTTCTGGAAGCTCTTGTTGGTAAGACTCTCAACATAACAACCTTGGATGGTCGACATATCACAGTTGAATTGGATGATATTGTGACACCGGGATATGAAAAGGTGGTCGCTGATGAAGGTATGCCACTTTCAAAGGATCCAAGCAAGAGAGGAAATCTTATAATAAAGTTTAATGTTATGTATCCACCAAGTTTGACCTCACAACAAAAATATGATGTAAGAAGGATTTTGAATGATCCTGCTGATTACTAA 843 0.3808 MGNHDYYKTLKVKRDATLEDLNDSYNNLVMKWHPDKINQYPSRNPSRKQEFEAKFKRISEAYEVLSDPKKRQIYDRSGQYPVNLENGGGSNMEVDEGVGVVETDFLCSLEELYKGCKKKVNVVRDVPDEFGKLKSEEEILKIHIKPGWKKGTKITFPGKGSQQPGSAPSDVIFVVNERPHPIFKRDGKDLIMTEKISLLEALVGKTLNITTLDGRHITVELDDIVTPGYEKVVADEGMPLSKDPSKRGNLIIKFNVMYPPSLTSQQKYDVRRILNDPADY* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1539 280 SUPERFAMILY HSP40/DnaJ peptide-binding domain 102 191 IPR008971 GO:0006457|GO:0051082
Mtr5g1539 280 SUPERFAMILY Chaperone J-domain 2 100 IPR036869 -
Mtr5g1539 280 Gene3D - 100 178 - -
Mtr5g1539 280 Gene3D - 180 259 - -
Mtr5g1539 280 ProSiteProfiles dnaJ domain profile. 5 78 IPR001623 -
Mtr5g1539 280 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 276 - -
Mtr5g1539 280 PRINTS DnaJ domain signature 7 25 IPR001623 -
Mtr5g1539 280 PRINTS DnaJ domain signature 25 40 IPR001623 -
Mtr5g1539 280 PRINTS DnaJ domain signature 50 70 IPR001623 -
Mtr5g1539 280 PRINTS DnaJ domain signature 70 89 IPR001623 -
Mtr5g1539 280 SMART dnaj_3 4 70 IPR001623 -
Mtr5g1539 280 Pfam DnaJ C terminal domain 102 259 IPR002939 -
Mtr5g1539 280 CDD DnaJ 5 67 IPR001623 -
Mtr5g1539 280 CDD DnaJ_C 107 262 - -
Mtr5g1539 280 Pfam DnaJ domain 5 75 IPR001623 -
Mtr5g1539 280 Gene3D DnaJ domain 1 90 IPR036869 -
Mtr5g1539 280 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 276 - -
Mtr5g1539 280 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Mtr5g1539 280 SUPERFAMILY HSP40/DnaJ peptide-binding domain 183 267 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1539 Mtr-Chr5 16469181 16471807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1539 6 75 C2H2 Transcription Factor Family AT1G74250 34.286 2.66e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1539 K09510 - gmx:100778440 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1539 5 16469181 16471807 Mtr5g1539 5 16469181 16471807 ECH