Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1538 ATGGAAGAATGTGCTCGACAAATAGTCGCACGCAACAATGAAGGACGTGACATATTAGAGATGAATATGTCACTTCATGTTGACACAATATCAGAGATGAATATGTCGGACGCAGAAATGGTAGAAGAGGAAGAAGACGATTATATAAGTCCAGATGATAATGGCCAACAAGTCCAACAAATTATGGGTTTGTTGGAAAATTTAGAAAATAATTGTCCTTCTCGTGACTTTGGAGAGCAGTGTTCAATTTGTTTGGAGGAGTTTTGTACTAAGTCAGAACTTGCTTATACAAAATGCTCACATGTCTTTCATAAAGAATGTATTGTTCCATGGATTCAGGAATGCGTCAACAATTCATCTTCTTACTCTTGTCCATTGTGTAGAAGTTATATAATATGA 399 0.3609 MEECARQIVARNNEGRDILEMNMSLHVDTISEMNMSDAEMVEEEEDDYISPDDNGQQVQQIMGLLENLENNCPSRDFGEQCSICLEEFCTKSELAYTKCSHVFHKECIVPWIQECVNNSSSYSCPLCRSYII* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1538 132 Pfam Ring finger domain 80 128 IPR001841 -
Mtr5g1538 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 131 IPR013083 -
Mtr5g1538 132 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 128 - -
Mtr5g1538 132 SUPERFAMILY RING/U-box 80 131 - -
Mtr5g1538 132 SMART ring_2 81 127 IPR001841 -
Mtr5g1538 132 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 128 - -
Mtr5g1538 132 ProSiteProfiles Zinc finger RING-type profile. 81 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1538 Mtr-Chr5 16451226 16451624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1538 79 132 C3H Transcription Factor Family AT3G58720 42.593 4.62e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1538 - K22378 mtr:MTR_5g037810 268.47