Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1537 ATGGAAGAATGTGCTCGACAAATAGTCGCACGCAACAATGAAGGACGTGACATATTAGAGATGAATATGTCACTTCATGTTGACACAATATCAGAGATGAATATGTCGGACGCAGCAATGGTAGAAGAGGAAGAAGAAGATTATGTAAGTTCAGATGATAATGGCCAACAAGTCCAACAAATTTTGGGTTTGCTGGAAAATTTAGAAAATAATTGTCCTTCTCGTGACTTTGGAGAGCAGTGTTCAATTTGTTTGGAGGAGTTTTGTACTAAGTCGGAACTTGCTTATACAAAATGCTCACATGTCTTTCATAAAGAATGTATTGTTCCATGGATTCAGCGATGGAGTTGA 351 0.3789 MEECARQIVARNNEGRDILEMNMSLHVDTISEMNMSDAAMVEEEEEDYVSSDDNGQQVQQILGLLENLENNCPSRDFGEQCSICLEEFCTKSELAYTKCSHVFHKECIVPWIQRWS* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1537 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 116 IPR013083 -
Mtr5g1537 116 ProSiteProfiles Zinc finger RING-type profile. 81 111 IPR001841 -
Mtr5g1537 116 Pfam RING-like zinc finger 80 108 IPR001841 -
Mtr5g1537 116 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 112 - -
Mtr5g1537 116 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 112 - -
Mtr5g1537 116 SUPERFAMILY RING/U-box 80 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1537 Mtr-Chr5 16441354 16441979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1537 79 113 C3H Transcription Factor Family AT3G58720 51.429 2.31e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1537 - K15699 mtr:MTR_5g037810 228.794