Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1514 ATGGATCCAGCATATCATCTACCGGAGATCTGGCAGTCCAGACCACCGCATCTCGCCCCGGGTTATCCAGATTTTTCAATTCAAGATCTCACTTCTGAACAGAAACCACTCAACCATGCCAGGAAAATTACAAGAGTAACAAATGAAGATTCAGTTCAATGCGTTTCTACCACCAATGGTGGTGCCCGTGGCAATTCCAACGCCGTGAATGATGATGGTGGTGACGGAAAAAGGAGTAAGACATCAGGGAACAGTAAAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAGAAACTAGTGATGAGCCACATCCTAAGAAAGACTACATCCATGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGATGCAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTCCATCACCAAGTAGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGACCGACACCTGGTATGGAAGTATTTCCTCCTAAAACTTTTGATCAGCAAACATTTGATACAACCGCCATACCATTTGCTTCACATGCTACAAGAGAGTATAGCCGAGGTGCATCACCAGAGTGGTTACATATGCAGCTGGGAGGTGGTTTTGAAAGAACATCATAA 720 0.4333 MDPAYHLPEIWQSRPPHLAPGYPDFSIQDLTSEQKPLNHARKITRVTNEDSVQCVSTTNGGARGNSNAVNDDGGDGKRSKTSGNSKGEENSSGKHAEETSDEPHPKKDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRPTPGMEVFPPKTFDQQTFDTTAIPFASHATREYSRGASPEWLHMQLGGGFERTS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1514 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 168 IPR011598 GO:0046983
Mtr5g1514 239 SMART finulus 124 174 IPR011598 GO:0046983
Mtr5g1514 239 MobiDBLite consensus disorder prediction 73 107 - -
Mtr5g1514 239 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 5 239 IPR024097 GO:0006355
Mtr5g1514 239 CDD bHLH_AtBPE_like 108 193 - -
Mtr5g1514 239 PANTHER BNAC05G07950D PROTEIN 5 239 - -
Mtr5g1514 239 MobiDBLite consensus disorder prediction 47 66 - -
Mtr5g1514 239 MobiDBLite consensus disorder prediction 1 107 - -
Mtr5g1514 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 187 IPR036638 GO:0046983
Mtr5g1514 239 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Mtr5g1514 239 Gene3D - 115 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1514 Mtr-Chr5 16179886 16182989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1514 74 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 75.200 2.47e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g1514 HLH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1514 - - lang:109332242 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1514 5 16179886 16182989 Mtr5g1514 5 16179886 16182989 ECH
Mtr5g1514 5 16179886 16182989 Mtr5g1514 5 16179886 16182989 PCT