Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1501 ATGAAAAGAATATACGCTAACCGGCCAGTGGTGGATTATGAATATGTTGCGAGATATGTGATGAAGGTGAAGACTCGATTTCAACATGCTGGTCATGTGTATTCGTCGTTTCTAGACATACTGCAAATGTACAGACAAAAAGAAAAGAATCTTGATGAAGTCATTCGTGAGGTTGCTATACTCTTTCAAGGTCATGATGATCTTATTCATGAGTTTGCTAATTTCCTTCCCCTACGTGGCTAG 243 0.3909 MKRIYANRPVVDYEYVARYVMKVKTRFQHAGHVYSSFLDILQMYRQKEKNLDEVIREVAILFQGHDDLIHEFANFLPLRG* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1501 80 Gene3D Paired amphipathic helix 16 77 IPR036600 GO:0006355
Mtr5g1501 80 SUPERFAMILY PAH2 domain 11 77 IPR036600 GO:0006355
Mtr5g1501 80 ProSiteProfiles PAH domain profile. 8 79 IPR003822 GO:0006355
Mtr5g1501 80 Pfam Paired amphipathic helix repeat 32 76 IPR003822 GO:0006355
Mtr5g1501 80 PANTHER SIN3B-RELATED 11 77 IPR039774 GO:0003714
Mtr5g1501 80 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 11 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1501 Mtr-Chr5 15978391 15980327 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g1501 PAH 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1501 K11644 - mtr:MTR_5g036820 107.457