Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1498 ATGAAGCGGCAACGTGACGACGTTTTCATGAGTTCATCTCAACTCAAACGACCTATGCTGAATACTTCTAGAGGAGAAGCGTCCGGGCAACCGCCGAATCGAGGTAGTCAAAAACTGACTACTAATGATGCCTTGGCATATCTCAAGGCGGTCAAGGATATTTTTCAGGATAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTTTAAAGCACAAAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACTTTTTAGAGGTCATAGAGACTTGATCTTGGGATTTAACACCTTTTTGCCAAAGGGCCATGAGATTACCCTTTCGTCTGAGGATGAGCAACCTCAACCAAAAAAGAAGGTTGAATTTGATGAAGCTATGAGTTATGTGAACACGATAAAGACTCGGTTTCAGGGAGATGTTCATGTTTACAAGTCATTTCTGGACATATTGAATACGTACAGAAAGGAAAGTAAGCCTATCACTCTGGTCTACAAAGAGGTTGCTGCACTCTTCCAAAACCACCCGGATCTTCTTGAAGGGTTTATTCATTTTCTTCCAGAAGCCACTACAGCTGCATCTACTCATGCTTTTGCTCGGAATTCCATGTTTGGTGATAGGAGCTCTGCAATGCCAACACTACGGCGAGTGCATGTTGAAAAGAGAGAAAGGACCATTGTTTCACATGGTGACCGTGACCCTAGTGTTGACCGTCCTGACCAAGATCACGATGGAGGTTCATTGAGGGCAGAAAAGGAGCGTAAGAGACGTATGGAGAAGGAAAAAGACCGTAAAGAAGATAGAGGCAGGAGAGAACGGGAACGAGATTATAGAGATTATGAGCATGACAGGGGTCGAGATAGGGAGAGGTTATCCCACAAACGAAAATCTGATCATAAGGCTGAAGACTCAGGAGCTGAACCATTGCTTGATGCAGATCAAAATTTCGGTACGCAAAACCAGGAGTTAGCTTTCTGTGATAAAGTCAAAGAGAGATTACAAAATCCTGGCGACTACCAGGAGTTTTTGAAGTGTGTACATATTTACAACAAGGAAATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGGTTGTGGTTTATTGGGAGACTATCCAGATCTTATGGAAAGTTTTAATGAGTTTTTGTTGCAAGCTGAGAAGAATGGTGGTGGATTCCTTGCTGGCGTCATGAATAGAAAGTCCTTATGGATTGAAGGACGTGGACTGAAACCAATGAATGCTGAACAGAGGGATAGAGATAGGGATGATGATAGGGATCGTTACAGGGATGATGAGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTCCTGTGATCAACAAGGATGTTTCAGGTTCTAAGATGTCCTTATATCCCAGCAAGGATAAGTATCTCTCAAAGCCAATAAATGAGCTGGACCTTTCTAACTGTGAGCGATGCACTCCTAGTTACCGCCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAAAACAGATCTTGGTGCAGAAGTGTTGAATGATCACTGGGTGTCAGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAAAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGGTAGAGTCTGTAAGTGTGACAACCACACGAGTAGAAGAGCTGTTAGAAGTGATCAGCAAAAATCCAATTAAAGGAGACAGCCCTATTTGTATTGAGGAGCACTTAACAGCTCTAAATTTCAGGTGTATTGAACGGATATATGGTGATCATGGTCTTGATGTGTTGGAAGTGCTAAGGAAGAAACCATCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGTGCTGATTTCGGTAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGACACAAGGAGCTTGAGCACCAAAGCCCTACTGACTGAAATCAAAGAGATCAGTGAGAAGAAACACAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGTAATAGACGGCCTATTCTTCCAAACCTGGAGTTTGAGTACATTGATCCAGACATCCATGAAGATTTGTATCGGCTTATAAAATATTCGTGTGCAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCAATGTTTTGTGTTCCTTGTCGGTCCCAGGGCGCTGAGGATACTGAAGAAGTTGTGGCTAAGAATAATTCTGTGAGAAATGTTGCTGAAACTGATGGTAATCCTGGTGTTGGTGCTACCATAATGAACCCAAAGCATGTAAGTACTTCTAGAAATGGTGATGAGTGTGTGCCAATAGATCAGTCAACTTCTAGCAAAGCATGGAAATCAAATGGTGATACTGGGGTTAGAGAAGATAAATGTCTTGATCCAGGCCGTACTATGCATAAAAGTGAAACTTTTGGCAGTAATCCACAACTTGGTAACCCGGATATTATTGCATTCATGCCTAATAAGCTATCAGGAGTCAATAAGCAAGATCTCTCTGGTGAGCGGTTAGAGAATGCTAATGTCTCGCCAGCATCTGGAATGGAGCTAAGTAATGGAAGAACAGAGATAGATAACACATCAGGATTTGCTGCTACTCCATCTAGAAATGGTAATGCATCTGTCACCAGAGGACTCGAGTTACCTTCATCAGAGGGTGGTGATTCTGCTAGACTATATGCATCCACAAATGGGGCCGTTGCTGGAGGCACTGAAGTGTGCAGATACCAAGAGGAATCGAATCCACAGTTCAAAAGCGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGACTTTGAAGAGGATAATTTTGCAGTTTATGGAGATGCTGGTTCGGAGGCAGTGCATAAAGGAAATGATGGTGGTTTGAAACGGCAATATCAAAATAGACGTGGCGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAATTATGCAGATGCTGATGATGAAGGGGAAGAAAGTCCTCAGAGGTCATCAGAGGGCAGTGAAAACGCTTCTGGAAACGTTGATGTTTCTGGAAGTGAATCTGCTGATGGAGAGGAGTGCTCTCAAGAAGAGCATGATGATGGAGAACATGATGATAAGGCTGAAAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCACATGATGTTGAAGGAGATGGAACATCATTACCATTTTCTGAACGCTTTCTTCTAAATGTGAAGCCATTGGCAAAGCATGTTCCCCCAGTGTTACATGTTGAAGACAAGAATTCTCGAGTTTTTTATGGAAATGACTCCTTCTATGTGCTGATTAGACTTCATCAGACATTGTATGAGAGGATACACGCAGCAAAGGTTAACTCATCATCCACTGAAAGGAAATGGAAGGCTTCAAATAATACAAGCTCCACTGATCAATATGATAGGTTCATGATTGCCCTTTACAGTTTACTGGATGGCTCTTCTGATAATTCAAAATTTGAGGATGACTGTCGTGCTATTATTGGAACTCAATCATATCTCTTATTCACATTAGACAAACTAATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCGAGTGATGAGATGGATAATAAGCTGCTTCAACTATATGCATATGAGAAATCAAGAAAACCTGGAAAGTTTGTCGATATAGTTTATCACGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCAAAACCAAAGACACTGTCTATTCAACTCATGGACTGTGGAAATGAGAAGCATGAAGTGACTGCTGTGTTAGTGGACCCAAATTTTTCAGCCTATCTGCACAATGATTTCCTCTCTATTGCCTCTGACAAAAAGTTGGGGATTTTCTTGAAAAGGAACAAACGTGGCTACGCCTGTAGTGATGAATTTTCAAGCGAGGTTATGGAAGGACTGCAGATTATTAATGGTCTGGAGTGTAAGATAGCTTCCAATTCTTCTAAGGTGTCGTACGTCTTAGATACAGAAGACTTCTTGTTTCGGACTAGAAGCAGAAGAAAAGCATTGCATCTGAAGAGTTCATGCTATGAACAACGAAAGCCTTCAAACATTCGTTCAAGCAGAGTAGCAAGGTTCCGCAAATTGTTTTCCTTCATGTGA 4230 0.413 MKRQRDDVFMSSSQLKRPMLNTSRGEASGQPPNRGSQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDFKAQRVDTDGVIERVKELFRGHRDLILGFNTFLPKGHEITLSSEDEQPQPKKKVEFDEAMSYVNTIKTRFQGDVHVYKSFLDILNTYRKESKPITLVYKEVAALFQNHPDLLEGFIHFLPEATTAASTHAFARNSMFGDRSSAMPTLRRVHVEKRERTIVSHGDRDPSVDRPDQDHDGGSLRAEKERKRRMEKEKDRKEDRGRRERERDYRDYEHDRGRDRERLSHKRKSDHKAEDSGAEPLLDADQNFGTQNQELAFCDKVKERLQNPGDYQEFLKCVHIYNKEIITRQELQSLVGGCGLLGDYPDLMESFNEFLLQAEKNGGGFLAGVMNRKSLWIEGRGLKPMNAEQRDRDRDDDRDRYRDDEMKERDREFRERDKSPVINKDVSGSKMSLYPSKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPIASQKTDLGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLVESVSVTTTRVEELLEVISKNPIKGDSPICIEEHLTALNFRCIERIYGDHGLDVLEVLRKKPSLALPVILTRLKQKQEEWARCRADFGKVWAEIYAKNYHKSLDHRSFYFKQQDTRSLSTKALLTEIKEISEKKHKEDDVLLAIAAGNRRPILPNLEFEYIDPDIHEDLYRLIKYSCAEVCTTEQLDKVMKIWTTFLEPMFCVPCRSQGAEDTEEVVAKNNSVRNVAETDGNPGVGATIMNPKHVSTSRNGDECVPIDQSTSSKAWKSNGDTGVREDKCLDPGRTMHKSETFGSNPQLGNPDIIAFMPNKLSGVNKQDLSGERLENANVSPASGMELSNGRTEIDNTSGFAATPSRNGNASVTRGLELPSSEGGDSARLYASTNGAVAGGTEVCRYQEESNPQFKSEREEGELSPNGDFEEDNFAVYGDAGSEAVHKGNDGGLKRQYQNRRGEEVCGEARGENYADADDEGEESPQRSSEGSENASGNVDVSGSESADGEECSQEEHDDGEHDDKAESEGEAEGMADAHDVEGDGTSLPFSERFLLNVKPLAKHVPPVLHVEDKNSRVFYGNDSFYVLIRLHQTLYERIHAAKVNSSSTERKWKASNNTSSTDQYDRFMIALYSLLDGSSDNSKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPKPKTLSIQLMDCGNEKHEVTAVLVDPNFSAYLHNDFLSIASDKKLGIFLKRNKRGYACSDEFSSEVMEGLQIINGLECKIASNSSKVSYVLDTEDFLFRTRSRRKALHLKSSCYEQRKPSNIRSSRVARFRKLFSFM* 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 218 316 - -
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 218 311 - -
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 418 451 - -
Mtr5g1498 1409 ProSiteProfiles PAH domain profile. 318 390 IPR003822 GO:0006355
Mtr5g1498 1409 SUPERFAMILY PAH2 domain 120 191 IPR036600 GO:0006355
Mtr5g1498 1409 Pfam Sin3 family co-repressor 486 576 IPR013194 -
Mtr5g1498 1409 Gene3D Paired amphipathic helix 319 391 IPR036600 GO:0006355
Mtr5g1498 1409 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Mtr5g1498 1409 PANTHER SIN3B-RELATED 23 1385 IPR039774 GO:0003714
Mtr5g1498 1409 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Mtr5g1498 1409 SUPERFAMILY PAH2 domain 36 106 IPR036600 GO:0006355
Mtr5g1498 1409 Gene3D Paired amphipathic helix 122 194 IPR036600 GO:0006355
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 994 1033 - -
Mtr5g1498 1409 SMART hdac_interact2seq4b 484 584 IPR013194 -
Mtr5g1498 1409 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Mtr5g1498 1409 Pfam Paired amphipathic helix repeat 343 387 IPR003822 GO:0006355
Mtr5g1498 1409 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 1064 1086 - -
Mtr5g1498 1409 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 23 1385 - -
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 14 39 - -
Mtr5g1498 1409 SUPERFAMILY PAH2 domain 323 389 IPR036600 GO:0006355
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 954 1092 - -
Mtr5g1498 1409 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Mtr5g1498 1409 Coils Coil 252 279 - -
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 797 825 - -
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 1 39 - -
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 1034 1049 - -
Mtr5g1498 1409 Pfam C-terminal domain of Sin3a protein 1125 1369 IPR031693 -
Mtr5g1498 1409 MobiDBLite consensus disorder prediction 783 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1498 Mtr-Chr5 15932612 15947137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1498 8 133 WRKY Transcription Factor Family AT4G12020 48.031 1.68e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g1498 Sin3a_C 5.4e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1498 K11644 - gmx:100811928 2054.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1498 5 15932612 15947137 Mtr5g1498 5 15932612 15947137 ECH
Mtr5g1498 5 15932612 15947137 Mtr8g1896 8 28698997 28717827 PCT