Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1484 ATGGCGGAACCACCTCGTCCATCAAAGCGCCCTAAAATCACCAGGGGGGAGGATGATTATATGCCTGGAAACATTATAGAGATAGAACTTCATAATTTCATGACATTTGATTACCTAAAATGTAAACCTGGACCTCGGTTGAATCTTGTAATTGGTCCCAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCAATTGCTCTTGGCCTATGCGGCGAGCCCCAGTTGCTTGGGCGAGCCACGTGTGTTGCAGAATTTGTGAAGGAGGGAAAAGAGTCCGGCCACATTAAGATTACCTTAAGAGGGGAGCATATAGGGGATCACATTACAATTATGCGTAAAATCAATATCAGCCGCAAGTCCGAATGGTTTTTAAACGGAAATATTGTGTCCAAAAAGGACGTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCCGTGCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGATACGCAGCTTCCTGAGCAACATCGTGCACTGATTGATAAAAGTCGTGCATTGAAGCATGTTGAACTATCTCTTGAGAAAAATGAAGGAACTTTGAATCAGTTGAAGGAACGTAATGCTGAGTTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCGTGCCAAGGCAAAATTAATGGAAAAGAAATTGCCATGGTTGAAGTATGATATGAAGCAGGCCGAATATCGTGAAGCTAAGGAGCGTGAGAAGACTGCCGCAAAGGAATCTGAGAAGGCTAACAAATTATTAAATGAACTTAAAGAACCTATCAAGAAACAAAATGATGAGAAAGATGCATTAGCTGAAAAATGGAGAAAGGTTAGCGACCGACTAATTGAGAATGCAGATAAGAGAAAGGGACTATTGGAGAAAGAGAGCCAATTGGAAGTGGAATTACAAGGAAATTACAAAGAGATGGATGAGTTGAGAAGGCACGAAGAAACTCGGCAGCAGAAACTTAGAAAAGCTAGGGATGAACTTTCTGCTGCTGAACTTGAACTTGAGAGTCTAAACCATTATGTACCTCCCACGGATGAGATTAATAGACTGATAGATGAAATTGTGGAGTCGGAAAGTTCTGCTAATCAAGTGGGAGAAAATAAGTCACTATCAGAAAAACTAATTAAACGAAAAAACTTCTCCTTGAAGAATTGTAAAGACAGGTTGAAGGAAATGAGTAAAAAAAGTTACAAGTGTTTACTTGCATTGAAAAATTCTGGGGTTAAAGAAATATTTGAAGCTGAAAAATGGGTCCAAGAGCATCGTCATGAATTCCACAAGGAGGTTTATGGCCCAGTTTTAGTTGAGGTAAATGTCCCAGATCAGTCTCATGCTAAATATCTAGAGGGTCAACTTGCTTGGTACACTTGGAAGTCTTTTATAACACAGGATCCTCGTGATCGAGACTTTTTGGTGAACAACCTACAACATTATGATGTGCCGGTTTTAAATTATACTGGTCGTGATAGCCAACAAAGAGAGCCTTCTGAAATTTCTCCTGAAATGCGTGCTATTGGTATTCATTTCCGTTTGGACCAAATTTTTGATGCTCCTGATGCTGTCAAGGAGGTGTTGATTAGCCAATCTAAACTTGATCATTCGTTTATTGGATCAGAAGAAACTGATCAGAAAGCCGTTGAGGTCCCAAACTTGGGAATTTCTAGTTTATGGACACCTGAGAATCACTATTACTGGTCGAAGTCTAGATATGGAAATCATGTCTCAGCGATTGTTGAGCAATTGCAACGCCCGAAACTTCTAGTGAATAATTTAAATGTGAGGGACATTGAGAATCTGAGCCAGGAAAGGGAGCTGCAAGAACAAATTGCTCACCTGGAGGAAAATATCAAAAGGTTTCAAGATGAGGAGAAAAGATTAAGGAATCAGGCTGCTAATCTTCGTAAACAGAAGGAGGACCTTAGTACGAGAGCACTGAATGAGCAAGAAAAACAACAGGCAATAATTAGGCGTATTGAACAAAAGAAAGTGATACTGAAATCGATGGAAGAGCAGGATGATTTAGATACCGGGTTAGCAAAGCTTGCTGATCAGGCAACGAAATGTAACATTTTGCGATTCCATAATGCAATTAAAGTTAAGGATCTTCTTGTTGAAGCTGCGCGTTACGGACGAAGTTATGTTGTACAGGGAATGGCTTTCATTGAATTTGCTGCAAAGATTGGAGACATGGAGGCCAATCTGAAGCAGCATGAAAATTTTGCCCGTCAAGCATCAGAGCACTTTAATAAATCTAAGAAAGAAGCTGAAGAATGTAAACAGAAGCTTACAGATTTATTAAACAATGCTAAATCAATTGCCCCTCTTACACCTGACCTACAGAAGGAATTTCTCGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGATACAACATCTCAAGCTAATTCAATGCTTTTTATGAATCCTCACATATTGCAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAAAAAAACTTGACATGGACAAGAAGGAAGCTACAAAGTGTCGTTCTGAATTGGAAACCATTAAGGAAAAGTGGCTTCCAACTCTCAGAAATCTTGTGGCTCAGATAAATGAAACTTTTAGTCGAAATTTTCAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAGCATGATATGAACTATGATCAATTTGGAATACTTATAAAAGTCAAATTCAGAGAAAATGGACAGCTTAAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACAATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTCGAGTTGTTGATGAGATTAACCAAGGCATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAACTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTACTTACACCAAAGCTGTTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAGCAACCCTCAAAGGCCTGCGCTAGTGGTGATCGATGGAGTATTATCACTGGACATGTTGGAGAGATTTCATGTTAA 3159 0.3985 MAEPPRPSKRPKITRGEDDYMPGNIIEIELHNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATCVAEFVKEGKESGHIKITLRGEHIGDHITIMRKINISRKSEWFLNGNIVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDTQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKERNAELEKDVERVRQRDELRAKAKLMEKKLPWLKYDMKQAEYREAKEREKTAAKESEKANKLLNELKEPIKKQNDEKDALAEKWRKVSDRLIENADKRKGLLEKESQLEVELQGNYKEMDELRRHEETRQQKLRKARDELSAAELELESLNHYVPPTDEINRLIDEIVESESSANQVGENKSLSEKLIKRKNFSLKNCKDRLKEMSKKSYKCLLALKNSGVKEIFEAEKWVQEHRHEFHKEVYGPVLVEVNVPDQSHAKYLEGQLAWYTWKSFITQDPRDRDFLVNNLQHYDVPVLNYTGRDSQQREPSEISPEMRAIGIHFRLDQIFDAPDAVKEVLISQSKLDHSFIGSEETDQKAVEVPNLGISSLWTPENHYYWSKSRYGNHVSAIVEQLQRPKLLVNNLNVRDIENLSQERELQEQIAHLEENIKRFQDEEKRLRNQAANLRKQKEDLSTRALNEQEKQQAIIRRIEQKKVILKSMEEQDDLDTGLAKLADQATKCNILRFHNAIKVKDLLVEAARYGRSYVVQGMAFIEFAAKIGDMEANLKQHENFARQASEHFNKSKKEAEECKQKLTDLLNNAKSIAPLTPDLQKEFLEMPTTIEELEAAIQDTTSQANSMLFMNPHILQQYEDRQRQIEDLAKKLDMDKKEATKCRSELETIKEKWLPTLRNLVAQINETFSRNFQQMAVAGEVSLDEHDMNYDQFGILIKVKFRENGQLKVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKACASGDRWSIITGHVGEISC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1484 1052 Coils Coil 767 798 - -
Mtr5g1484 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 1003 IPR027417 -
Mtr5g1484 1052 Gene3D - 847 1021 IPR027417 -
Mtr5g1484 1052 CDD ABC_SMC5_euk 925 1027 - -
Mtr5g1484 1052 Coils Coil 332 366 - -
Mtr5g1484 1052 Coils Coil 248 296 - -
Mtr5g1484 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1047 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Mtr5g1484 1052 CDD ABC_SMC5_euk 23 169 - -
Mtr5g1484 1052 Coils Coil 841 864 - -
Mtr5g1484 1052 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Mtr5g1484 1052 Gene3D - 24 232 IPR027417 -
Mtr5g1484 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 299 IPR027417 -
Mtr5g1484 1052 Coils Coil 195 229 - -
Mtr5g1484 1052 Coils Coil 628 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1484 Mtr-Chr5 15751811 15766994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1484 6 1051 Structural Maintenance of Chromosomes family AT5G15920 58.739 0.0 1214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1484 K22803 - gmx:100778678 1512.66