LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g1481	ATGTCGTCTTCAACCTCCAAAACCAAATGGATCTACGAAGTGTTCATAAATTTTAGGGGGGAAGATACTCGTAGCAATTTCGTTTCTCATCTTTATGCAACCCTTTCAAATGCTGGAATTAACACTTTTCTTGACGATGAGAATCTTGAAAAGGGAAAGGAGCTGGGACCAGAATTATTGCGAGCAATACAAGGTTCTCAAATAATCATTGTTGTTTTCTCCAAAAATTATGTTCAATCTAGTTGGTGTCTTGATGAACTCGAACAAATCATGGAGTGCCACAAAAGTACGGGTCAAGTTGTTATGCCCGTATTTTATGGTGTTACTCCTTCATTTATACGTGAATATGCTAGCCAAACTTTTGGGGAAGCTATCGTTAGCAAAACAAATCATTTCGTCCTCCATAATTCGGATCCGAGGAAAAATCCACGAAATAAGGCACAAGGCGATGATCATTATAGCCGTGACAGGCTGAAAATTTCAGAAAAGAAAGATTCACTTGAGCAAGCACTCGGGGATGCTTCGATCTTGGCTGGTTGGGATATGGATAATTACAGTAATGAAAGCAGTGTTGTGAAGGAAATAGTTGGCAATGTTTTGAAAAAACTAGACAAGAAATACTTGCCTATCCCAGATTTTCCAGTAGGATTAGAATCCCGTGCGGAAAAATTGATTCAGTTTCTAAGAAAGAATACAAGAGGAGTTTGTTTAGTAGGGATTTGGGGAATGGGAGGGATTGGCAAAAGCACCATTGCCAAAGTCGTCTACAATAATCTTTGTTATGAATTTGAAGATCAAAGCTTCCTTGCTAATATTAGACAAGTTTGGGAGAAAGAGAGGGGGCAAATTGATTTACAAGAACAACTTCTTTCAGATATCCTTAAAACAAGAAATGTAAAGGTGCATAATGTTGAGTGGGGAAAAGCTATGATCAATGAACGACTTTGCACGAAACGGGCACTTGTTATACTTGATGATGTCAGTACACGCGAGCAATTAAATGCATTATGTGGAAATCGAAATGGGATTGGTCCAGGAAGCATAATAATCATCACAACAAGAGATGCACGTCTACTTGACATCCTTGGAGTTGATTTTATTTATGAAGCGGAGGGATTGAATGTGCACGAATCTCGTAGGCTTTTCAACTGGCATGCGTTTAAGGAGGCGAATCCAAGTGAAGCTTTCCTCATACTCTCCGGAGATGTAGTTTCCTATTGTGGTGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATTCAATAGGAGAAAACGAGAGTGGCAGAGTGTAATATCCAAGCTACAAAAGATACCCAATGATCAAATACACGAGAAACTAAAAATAAGCTTTGATGGTTTAGAGGATCATATGGAAAAGAATATATTTCTTGATGTCTGTTGTTTCTTTATCGGTAAGGATAGAGCTTATGTTACAGAGATACTAAATGGGTGTGGACTTCATGCTGATATTGGAATAGAAGTGCTGATAGAGAGAAGCCTCCTAAAAGTTGAAAAGAATAACAAGCTTGGAATGCATGCTCTGCTACGAGACATGGGAAGAGAAATTGTTCGTGAAAGTTCACCTGAGGAGCCTGAGAAACGTACTCGATTGTGGTGTTTTGAAGATGTAGTTGATGTACTGGCCGAACAAACCGGAACAAAAGCCATCGAGGGATTGGTTTTGAAGTCGCAAAGGACCAGTAGAGTTTGCTTCAATACAATTGCTCTTAAGAAAATGAAGAAATTGCGATTGTTGCAACTTGATAATGTACAAGTCATCGGAGATTATGAGTGTTTTTCGAAGCAGTTGAGATGGCTTTCTTGGCAAGGATTTCCTTTAAAATACATGCCAGAAAACTTTTATCAGAAAAATGTAGTTGCTATGGACTTAAAACACAGTAATCTTACACAGGTTTGGAAGAAGCCTCAGTTGATAGAGGGACTGAAGATCCTAAATCTCAGTCATTCTAAGTACTTGAAAAGAACCCCCGACTTTTCAAAATTACCAAACCTAGAAAAGCTAATTATGAAGGATTGTCAAAGTCTGTTGGAGGTACACCCGTCCATTGGAGATCTCAACAATCTTCTTCTGATAAATTTGAAGGACTGTACGAGTCTTAGCAATCTCCCAAGAGAGATCTATCAATTGAGAACAGTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTAGACGAAGATATATTGCAAATGGAATCCTTGAAAACTCTAATGGCAGCAAATACTAGAGTCAAACAAGTGCCTTTTTCGATCGTCAGATCAAAAAGCATTGGATATATATCTCTATGTGGATATAAAGGATTATCACATGATGTTTTTCCTTCTCTCATTAGGTCTTGGATATCACCAGCAATGAATTCCTTACCATGCATTCCCCCTTTTGGTGGCATGTCAAAGTCTCTTGCTTCCTTGGATATAGAGAGCAATAATCTGGATTTGGTGTCTCAATCACAAATACTTAACAGTTGTTCAAGACTTAGAAGTGTTTCAGTACAATGTGACTCAGAGATTCAACTGAAACAAGAATTCAGAAGATTTCTTGATAATCTATATGATGCAGGTCTTACTGAAGTGGGAACATCACAGGCATTACAAATTTCGGATCTTTTCATGAGATCCCTTTTGTTTGGTATCGGAAGTTGTCACATTGTCATCAATACTCTTGGCAAGAGCTTATCACGGGGATTGACAACCAATTTAGGTGATTCCCTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACTTTTCCAAGTGCCGAAGGATAGTGATTCTTGCATGAAGGGAATAGCTTTATGCGTTCTTTATTCATCAACACCTGAAAATTTGGCAACTGAAAGTCTCACTAGTGTCTTGATCATTAATCACACAAAATTCACTATCCAGATTTACAAACGAGACACAATAATGTCGTTTAATGATGAAGATTGGCAAGGCATAGTGTCAAATTTAGGAGTTGGTAACAATGTGGAAATATTTGTAGCTGTTGGGCATGGATTTACTGTTAAGGAAACTGCGGTTTATCTAATATATGATCAATCTATTTCTACGGAAGTTGAGCCATCAAGTACTATTGAAGTTGACCCATCAACTAGCACAAATATTGAGCCATTACATGAAGTGGAAGTGCAATCATCACTTAGTGTGAAAATGGAGGCATCGGCCGAAGAGCAACTACAACCATCACTTGATGTGAAAACGGAGGCATCAGCTGAAGAGGATGTACAACCATCACCTAATGTGAAAATAGAGCCATCAGCTAAAGAGGAAGCACAACCATCACCCGATGTGAAAATGGAACCATCACTTGTCAAGAATGAACCATTACCGAACGCAAATAGAAAAATATTTACAAGACTTGCAAAGAGAGTGGGAGAATGTTTATGCTTGAACCAGAAATGA	3456	0.3854	MSSSTSKTKWIYEVFINFRGEDTRSNFVSHLYATLSNAGINTFLDDENLEKGKELGPELLRAIQGSQIIIVVFSKNYVQSSWCLDELEQIMECHKSTGQVVMPVFYGVTPSFIREYASQTFGEAIVSKTNHFVLHNSDPRKNPRNKAQGDDHYSRDRLKISEKKDSLEQALGDASILAGWDMDNYSNESSVVKEIVGNVLKKLDKKYLPIPDFPVGLESRAEKLIQFLRKNTRGVCLVGIWGMGGIGKSTIAKVVYNNLCYEFEDQSFLANIRQVWEKERGQIDLQEQLLSDILKTRNVKVHNVEWGKAMINERLCTKRALVILDDVSTREQLNALCGNRNGIGPGSIIIITTRDARLLDILGVDFIYEAEGLNVHESRRLFNWHAFKEANPSEAFLILSGDVVSYCGGLPLALEVLGSYLFNRRKREWQSVISKLQKIPNDQIHEKLKISFDGLEDHMEKNIFLDVCCFFIGKDRAYVTEILNGCGLHADIGIEVLIERSLLKVEKNNKLGMHALLRDMGREIVRESSPEEPEKRTRLWCFEDVVDVLAEQTGTKAIEGLVLKSQRTSRVCFNTIALKKMKKLRLLQLDNVQVIGDYECFSKQLRWLSWQGFPLKYMPENFYQKNVVAMDLKHSNLTQVWKKPQLIEGLKILNLSHSKYLKRTPDFSKLPNLEKLIMKDCQSLLEVHPSIGDLNNLLLINLKDCTSLSNLPREIYQLRTVKTLILSGCSKIDKLDEDILQMESLKTLMAANTRVKQVPFSIVRSKSIGYISLCGYKGLSHDVFPSLIRSWISPAMNSLPCIPPFGGMSKSLASLDIESNNLDLVSQSQILNSCSRLRSVSVQCDSEIQLKQEFRRFLDNLYDAGLTEVGTSQALQISDLFMRSLLFGIGSCHIVINTLGKSLSRGLTTNLGDSLPGDNYPSWLAYKGEGPSVLFQVPKDSDSCMKGIALCVLYSSTPENLATESLTSVLIINHTKFTIQIYKRDTIMSFNDEDWQGIVSNLGVGNNVEIFVAVGHGFTVKETAVYLIYDQSISTEVEPSSTIEVDPSTSTNIEPLHEVEVQSSLSVKMEASAEEQLQPSLDVKTEASAEEDVQPSPNVKIEPSAKEEAQPSPDVKMEPSLVKNEPLPNANRKIFTRLAKRVGECLCLNQK*	1152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g1481	1151	SUPERFAMILY	Toll/Interleukin receptor TIR domain	1	116	IPR035897	-
	Mtr5g1481	1151	ProSiteProfiles	TIR domain profile.	10	203	IPR000157	GO:0007165
	Mtr5g1481	1151	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	1030	IPR044974	GO:0006952
	Mtr5g1481	1151	Pfam	TIR domain	12	124	IPR000157	GO:0007165
	Mtr5g1481	1151	Gene3D	-	206	365	IPR027417	-
	Mtr5g1481	1151	MobiDBLite	consensus disorder prediction	1070	1130	-	-
	Mtr5g1481	1151	Pfam	NB-ARC domain	219	442	IPR002182	GO:0043531
	Mtr5g1481	1151	PRINTS	Disease resistance protein signature	237	252	-	-
	Mtr5g1481	1151	PRINTS	Disease resistance protein signature	314	328	-	-
	Mtr5g1481	1151	PRINTS	Disease resistance protein signature	407	421	-	-
	Mtr5g1481	1151	PRINTS	Disease resistance protein signature	716	732	-	-
	Mtr5g1481	1151	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	15	1030	-	-
	Mtr5g1481	1151	MobiDBLite	consensus disorder prediction	135	154	-	-
	Mtr5g1481	1151	Gene3D	-	372	464	IPR042197	-
	Mtr5g1481	1151	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	204	466	IPR027417	-
	Mtr5g1481	1151	Gene3D	-	5	205	IPR035897	-
	Mtr5g1481	1151	Gene3D	Ribonuclease Inhibitor	552	878	IPR032675	-
	Mtr5g1481	1151	SUPERFAMILY	L domain-like	513	842	-	-
	Mtr5g1481	1151	SMART	till_3	11	141	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g1481	Mtr-Chr5	15686883	15717237	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g1481	12	762	WRKY Transcription Factor Family	AT4G12020	29.572	4.23e-80	287

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g1481	-		-	mtr:MTR_5g036240	1883.61