Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1472 ATGATTGATCGATGTTGGAGACCAAATCCTGAATGGAGAAAACATAGACAACAACTAGCAACTTGCTCTGTAGGCTATGCTGGAAAGATGACAAACAACATTGGTAAGGGTCTCACCCATTATAAAGTTACTGACCCTAATGATGATCCTATAAAACCTCAACCTGGTACGTTGAGATATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCAAAAAAGACATGAACATTAAACTCATAAAGCCCCTTCTCATCAGCAGTTTCACAACCATTGATGGTCGCGGAGTCAATGTGCACATTGCTGATAATGCATGCTTAATGATATCCAAGGCCACCGACATAATCATTCATAGCATTCGAATTCATCACTGCAAAGCTCAAACCCCAGGGATGGTGATGGGGCCAAATGGGAAGGTAATTCATTTGGGCCAAGTAGATGGAGATGCAATTAGATTAGTCACCGCTTCAAAAATTTGGATTGATCATAATACACTTTATGATTGCGAAGATGGTCTTCTTGATGTCACACGAGGTTCTACTAATGTGACTGTTTCAAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGGCATGATGATGGGTATCTGAGGGACATAAACATGAAAGTTACTGTTGTGTACAATCATTTTGGACCTAACTGCAACCAACGAATGCCAAGGATTCGTCACGGATATGCACATGTAGCCAACAATCTTTACTTAGGATGGATGCAATATGCCATCGGCGGAAGCATGGGGCCTAGCCTCAAAAGTGAATCTAATCTCTTCATAGCGCCTAAAGTTGGGAGTAAAGAGGTAACATGGAGAAAAATTGATCATACAAATGAAGACAAATGGGAATTTCATTCGGTAAAAGATGCTTTTGAAAACGGAGCCGCCTTCGCAGTTACAAAAGGAAGTCGTGTGCCAAAGCCAAATTATAGCAAAGAACAAATATTTCAAGTTGTTGATGTTAAATCTATAAGATCTTTAACAAGATCATCAGGCGCATTTCAATGTAGTAAAACCTCCATCTGTTGA 1053 0.3951 MIDRCWRPNPEWRKHRQQLATCSVGYAGKMTNNIGKGLTHYKVTDPNDDPIKPQPGTLRYGASVIQGKVWITFKKDMNIKLIKPLLISSFTTIDGRGVNVHIADNACLMISKATDIIIHSIRIHHCKAQTPGMVMGPNGKVIHLGQVDGDAIRLVTASKIWIDHNTLYDCEDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYLRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRKIDHTNEDKWEFHSVKDAFENGAAFAVTKGSRVPKPNYSKEQIFQVVDVKSIRSLTRSSGAFQCSKTSIC* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1472 350 Pfam Pectate lyase 87 267 IPR002022 -
Mtr5g1472 350 PRINTS Pollen allergen Amb family signature 47 72 IPR018082 -
Mtr5g1472 350 PRINTS Pollen allergen Amb family signature 84 100 IPR018082 -
Mtr5g1472 350 PRINTS Pollen allergen Amb family signature 148 169 IPR018082 -
Mtr5g1472 350 PRINTS Pollen allergen Amb family signature 228 247 IPR018082 -
Mtr5g1472 350 PRINTS Pollen allergen Amb family signature 250 269 IPR018082 -
Mtr5g1472 350 PRINTS Pollen allergen Amb family signature 290 314 IPR018082 -
Mtr5g1472 350 PRINTS Pollen allergen Amb family signature 321 344 IPR018082 -
Mtr5g1472 350 PANTHER PECTATE LYASE 1 347 - -
Mtr5g1472 350 SUPERFAMILY Pectin lyase-like 2 306 IPR011050 -
Mtr5g1472 350 Gene3D - 1 343 IPR012334 -
Mtr5g1472 350 SMART amb_all 76 273 IPR002022 -
Mtr5g1472 350 PANTHER PECTATE LYASE 18-RELATED 1 347 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1472 Mtr-Chr5 15511860 15513380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1472 30 277 Polysaccharide Lyase AT5G09280 74.597 6.31e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1472 K01728 - gmx:100780437 622.083