Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1470 ATGGAAAAGGAAATGTGTGATATTTCTGTTGAGAAGAGGCTTAGGCTATTTGGTTTTGAGCTAAATCCAACAAAGAATAATAATGAAGGAGTTGCCAAAGAGTCTAATGAAGGAGATGAAAGTGTGAATTCCTCTAACTCAATTTCATCTGGAGGAGATAAAATTGTCCAAGAAAAAAATTCATCTAAAGACCAAGATGAGAGAAAATTTGAGTGTCAATATTGTTTCAAAGAATTTGCAAATTCACAAGCATTAGGAGGCCATCAAAATGCACACAAGAAAGAAAGATTGAAGAAAAAAAGATTGCAACTTCAAGCTAGGAAAGCTAGCATAAACTATTACTTGCAACCTTTTCAAAAAAATCATCATGGTTTTTCTTACCATGGTTCTGATCATACTCATTGGTTTTATGACCCTTCTTCTTATAATTCTGAATTCTCTTTGAGTGAAGAATCTCAAATTAGTTTCAAGTCAAAAAATGTTCATGATACTAACTCTAGTTGGTATTCTCTTCCTTCTCATGTTTCTCCTTCCCAACAAGATACTTGCATGTTTACTTTCTCCAACGATGATAAGCCTTCTTCAAACCAAAGTCATAGTAAAGCTTTAGATCTTCAACTAGGTCTTAATTTGCAGTCAAATACAATAAGAAGCTCTTTGAAAAGGTCGTAG 672 0.3333 MEKEMCDISVEKRLRLFGFELNPTKNNNEGVAKESNEGDESVNSSNSISSGGDKIVQEKNSSKDQDERKFECQYCFKEFANSQALGGHQNAHKKERLKKKRLQLQARKASINYYLQPFQKNHHGFSYHGSDHTHWFYDPSSYNSEFSLSEESQISFKSKNVHDTNSSWYSLPSHVSPSQQDTCMFTFSNDDKPSSNQSHSKALDLQLGLNLQSNTIRSSLKRS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1470 223 MobiDBLite consensus disorder prediction 21 56 - -
Mtr5g1470 223 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Mtr5g1470 223 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
Mtr5g1470 223 PANTHER ZINC FINGER PROTEIN 5 7 212 IPR044299 GO:0010090
Mtr5g1470 223 Gene3D Classic Zinc Finger 43 123 - -
Mtr5g1470 223 MobiDBLite consensus disorder prediction 21 64 - -
Mtr5g1470 223 PANTHER ZINC FINGER PROTEIN 5 7 212 - -
Mtr5g1470 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1470 Mtr-Chr5 15486045 15487036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1470 11 209 C2H2 Transcription Factor Family AT1G10480 40.094 3.59e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g1470 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1470 - - gmx:100527006 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1470 5 15486045 15487036 Mtr5g1470 5 15486045 15487036 ECH