Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1426 ATGCATTTTTTTCACTCCCAAATCCACAATAACAATGGTGCTATCACAAACCCTTCAATTATTTCTCCTCCATATTCATCAATTCCTTATAATTCAGAACCAACACAAATTTCTTCATCTTCTGGTAACAAAATAAGCCCTGCAATACTTTTCATCATAGTTATATTAGCTATAATATTTTTCATCTTAGGTTTTCTTCATTTACTTGTAAGATTTCTTATAAAGCATAGATCTTCATCATCATCATCAACAACAACAATTTCTCAATCAAATAGATTTCCTGAAATGTCTGAATCTGATGCATACCAAAGACAGTTACAACAGCTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCATTCATTGATGCACTTCCTGTTTTCATTTACAAAGAGATAATTGGTTTGAAAGAGCCATTTGATTGTGCTGTTTGTTTATGTGAGTTTTTGGAACAAGATAAGTTAAGATTGTTACCAAATTGTAACCATGCTTTTCATATTAGTTGTATAGATACATGGTTATTGTCAAATTCATCTTGTCCTTTATGTAGAAATACCCTTTATTCACAAGGGTTTTCTTTTGATAAAAATCCTATATTTGAGTTTGAGGATGAAAGGGATGAAGAATTTGTTATAGGGATTGGTTCAGTTAACAAGGATATGGAAAATCATATAATGAATGGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGTTCAAATAATGAAGAAGGGGGTGCAAAAAGTGAAGGAGAGAGTAGTAATTGTAATTTTGATGTTAGGAGATGTTATTCAATGGGGTCTTTTCAATATGTTGTTGCTGATTCAGATTTGCAAGTTGCTTTGAAAGCTTCTAAGGGTGATGGTAGTATGAGACAATTGAAGGGAATTAGAGAAATTCAAGATGGGAGTTTTTCCAATGATGGTGATGTTGAAGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCAAAGATTTGGCAATGGTCTAAGAAAGATAGTAAGATACCAAGTTCATCTGATACACATTTTCATAATTGTGTTGCCAATGAAAGTTTGCAATGGATGAATAAAGCTAGAGGTACATGA 1107 0.3225 MHFFHSQIHNNNGAITNPSIISPPYSSIPYNSEPTQISSSSGNKISPAILFIIVILAIIFFILGFLHLLVRFLIKHRSSSSSSTTTISQSNRFPEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHISCIDTWLLSNSSCPLCRNTLYSQGFSFDKNPIFEFEDERDEEFVIGIGSVNKDMENHIMNGKRVFSVRLGKFRSSNNEEGGAKSEGESSNCNFDVRRCYSMGSFQYVVADSDLQVALKASKGDGSMRQLKGIREIQDGSFSNDGDVEGKKINIARKGESFSVSKIWQWSKKDSKIPSSSDTHFHNCVANESLQWMNKARGT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1426 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Mtr5g1426 368 SUPERFAMILY RING/U-box 121 190 - -
Mtr5g1426 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 362 - -
Mtr5g1426 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 362 - -
Mtr5g1426 368 Pfam Ring finger domain 141 184 IPR001841 -
Mtr5g1426 368 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Mtr5g1426 368 SMART ring_2 142 183 IPR001841 -
Mtr5g1426 368 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1426 Mtr-Chr5 15014318 15016285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1426 44 346 C3H Transcription Factor Family AT2G18650 41.543 2.00e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1426 - - gmx:100805154 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1426 5 15014318 15016285 Mtr8g1941 8 29154294 29155939 PCT