Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1417 ATGATCCTAACAGAAAACGGGTCGGGTCGTCGGATATTGAACTTTCCGGCGGTTCATCCATGTATAAACATTGCTTCCTCCACCCTTCTATCTTCCCTCATCAATCTCTCCGACAAGATTTCCAATTTCCAACACAAATTCTTCTCATCCAACAAACGAAATGCTAGAAAAGCCATTCGTTTGATTGGTCTTCTTCAACCTTTCCTCCATGAGATCTTAGAGAATCATTCAAATCTTCCGGCTCCGGTGACCCTTTGTTTTTCTGAGCTTCATGTTATCTTCCAGAAGCTTTTTTTCTTGATGGAAGATTTGACTTGTGAAGGTGGTAGGTTGTTTATGTTGATGGAGTCGGGTCGGGTTGCAACAATGTTTCGGGTCTTGTTTAGATCCGTTGCAAGTGCTCTTGATGTTTTGGATTTTGATTCTGTTGAGGTGGGTTTGGAAGGTAAAGAGGAGGTTTTGTTGGTGATGAAGCAAGTGAGGGAGGGGAGATTTAAATTTGAGGTTGATGATGAAGAGGTTGTGACGTGTGTTAAGAAGGTTTTGAACCTTTTTGAGAAAAGGGTTGCTCCAAAAAAGATTGATTTGAAGAGGGTTGTTGATTATATTGGGGTTTGTGAGTGGAATGAGATTAATAAAGAGGTGAAGTTTTTGGATGGTGAAATTGGGTTTGAGTGGTTGAATGAGGAAAAGGAAAAGGTGGGTTTTTTGAGTAGTTTGATGGGGTTTATGTGTTATTGTAGATGTGTGATGATTGAAATCGTGGATTGTGAAGAGGGTAAGAGTGGGAAGAAATTTGATGCAAGAAGGGAAAGTGAGATGATTTTGAGTTGTTTGAACTCCGATGATTTTCGATGTCCAATCTCTTTGGAATTGATGAGTGATCCTGTGACTATAGAAACAGGTCATACTTATGATCGATCATCAATTCTCAAATGGTTTAGAAGTGGAAATTCAACATGTCCAAAGACAGGTAAAAGTCTTGGCAGTATAGAATTGGTACCTAATTTGGTGCTAAGGAGGTTGATTCAGCAATATTGTAATGTCAATGGCATTCCTTTTGCTGATTCGAGTCGTCGGAGTCGGGACATTACTAGGACGGTGGAGCCGGGAAGTGTAGCGGCAGAGGGAGCAATGACACTCTTGGCTGGTTTTCTTTGTAGAAGTCTTGACAATGGAAATGTGGAACAGAAGAACCATGCTGCATTTGAGGTAAGGGTTCTTACAAAAACAAGCATTTTTAGTAGGTCTTGTTTTGTAGAATCTGGTTTAGTTCCTCTTTTGTTGTTGCTGTTGGCATCAAGTGATTCATCAGCACAAGAGAATGCTATTGCAGCTCTTTTAAACCTCTCAAAATACATCAAAAGTAGAAGTGAAATGGTTGAGAATTGGGGACTAGAAATGATTGTTGGTGTCTTAAACAAAGGGATAAATATTGAAGCAAAACAACATGCTGCAGCAGTCTTGTTTTACCTTGCTTCAAACCCTGAACATGCTAACTTAATAGGTGAAGAGCCAGAAGCAATTCCCTCATTGATCAGTCTCATCAAAGATGACAACAAACGAAGTGTAAAGAATGGTTTAGTTGCAATTTTCGGCCTCCTAAAAAACCATGAAAATCACAAGAGGATACTTGCTGCTCAAGCAATTCCTTTGTTAGTTAACATCTTAAAAGCATCTGAAAAAGAAGACCTTGTCACAGACTCACTAGCAATTCTAGCAACTCTTGCAGAGAAAAGTGATGGAACATCGGAAATCCTTCGTTTCGGAGCTTTGCATGTAGCTGTTGAAGTTATGAGTTCTTCTTCCACTACTTCAAGATTAGGGAAAGAACATTGTGTGTCATTGTTGCTTTCTCTATCAATAAATGGTGGAGAAAATGTGATTGCTCATTTAGTAAAGAGTTCTTCACTTATGGAATCTTTATATTCACAACTAAGTGAAGGAACTTCGAGAGCAAGCAAGAAAGCAAGTTCTCTCATAAGGGTCCTCCATGATTTTTATGAAAGGAGATCCTCTAACTACAGGACATCAGTTATTCCACGAGAAAGATTCATTCATGTATGGTAA 2070 0.3928 MILTENGSGRRILNFPAVHPCINIASSTLLSSLINLSDKISNFQHKFFSSNKRNARKAIRLIGLLQPFLHEILENHSNLPAPVTLCFSELHVIFQKLFFLMEDLTCEGGRLFMLMESGRVATMFRVLFRSVASALDVLDFDSVEVGLEGKEEVLLVMKQVREGRFKFEVDDEEVVTCVKKVLNLFEKRVAPKKIDLKRVVDYIGVCEWNEINKEVKFLDGEIGFEWLNEEKEKVGFLSSLMGFMCYCRCVMIEIVDCEEGKSGKKFDARRESEMILSCLNSDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNSTCPKTGKSLGSIELVPNLVLRRLIQQYCNVNGIPFADSSRRSRDITRTVEPGSVAAEGAMTLLAGFLCRSLDNGNVEQKNHAAFEVRVLTKTSIFSRSCFVESGLVPLLLLLLASSDSSAQENAIAALLNLSKYIKSRSEMVENWGLEMIVGVLNKGINIEAKQHAAAVLFYLASNPEHANLIGEEPEAIPSLISLIKDDNKRSVKNGLVAIFGLLKNHENHKRILAAQAIPLLVNILKASEKEDLVTDSLAILATLAEKSDGTSEILRFGALHVAVEVMSSSSTTSRLGKEHCVSLLLSLSINGGENVIAHLVKSSSLMESLYSQLSEGTSRASKKASSLIRVLHDFYERRSSNYRTSVIPRERFIHVW* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1417 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Mtr5g1417 689 SUPERFAMILY RING/U-box 282 354 - -
Mtr5g1417 689 Pfam U-box domain 282 348 IPR003613 GO:0004842|GO:0016567
Mtr5g1417 689 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mtr5g1417 689 Pfam Armadillo/beta-catenin-like repeat 420 451 IPR000225 GO:0005515
Mtr5g1417 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 352 IPR013083 -
Mtr5g1417 689 PANTHER U BOX DOMAIN-CONTAINING 4 679 - -
Mtr5g1417 689 Gene3D - 359 675 IPR011989 -
Mtr5g1417 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 679 - -
Mtr5g1417 689 CDD RING-Ubox_PUB 284 326 IPR045210 -
Mtr5g1417 689 SUPERFAMILY ARM repeat 385 664 IPR016024 -
Mtr5g1417 689 SMART arm_5 453 494 IPR000225 GO:0005515
Mtr5g1417 689 SMART arm_5 537 578 IPR000225 GO:0005515
Mtr5g1417 689 SMART arm_5 495 536 IPR000225 GO:0005515
Mtr5g1417 689 SMART arm_5 411 452 IPR000225 GO:0005515
Mtr5g1417 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Mtr5g1417 689 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1417 Mtr-Chr5 14853193 14855609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1417 1 689 U-box Gene Family AT1G60190 44.635 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1417 - - gmx:100795816 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1417 5 14853193 14855609 Mtr5g1417 5 14853193 14855609 ECH