Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1394 ATGTCAACACTAAACCATCTTTTTGATCTTCCGGAACAAATATGCTATGTACAATGTGGATTCTGCAATACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGACAATGGTGGTGACAGTAAGATGTGGTCACTGCACAAGTCTCTTATCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTACTCATCTTGAGCAAAAAGAAAGTAGTAGTCCAGATGAAGATGCAAACAAGACTTTGAACAGTAATACTAGTGCATCCATGATGACTTATTCTGATTGTGAGGAAGATGATGTAATTCCAATCAGCAATGTTGTCAACAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTAAAAACCCTGATATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCTAATTGCCCCCCAACTCAGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAATTTGTGGATCTTGACTCCCAAGTGGACCCCAATGAAGCAGAGGTGAATGAAGAAGAACAAGGATTCCGTGGAAGAAAGGTACCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 654 0.4021 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLTMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEQKESSSPDEDANKTLNSNTSASMMTYSDCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCPPTQCKGDEESCSQTDQFVDLDSQVDPNEAEVNEEEQGFRGRKVPRNSILERTPFE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1394 217 Gene3D High mobility group box domain 112 183 IPR036910 -
Mtr5g1394 217 PANTHER AXIAL REGULATOR YABBY 4 1 181 - -
Mtr5g1394 217 Pfam YABBY protein 11 165 IPR006780 GO:0007275
Mtr5g1394 217 SUPERFAMILY HMG-box 111 164 IPR036910 -
Mtr5g1394 217 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Mtr5g1394 217 MobiDBLite consensus disorder prediction 194 210 - -
Mtr5g1394 217 MobiDBLite consensus disorder prediction 187 217 - -
Mtr5g1394 217 CDD HMGB-UBF_HMG-box 122 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1394 Mtr-Chr5 14613085 14615247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1394 2 217 C2C2-YABBY Transcription Factor Family AT1G23420 56.388 4.81e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mtr5g1394 YABBY 2e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1394 K25796 - gmx:100804172 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1394 5 14613085 14615247 Mtr5g1394 5 14613085 14615247 ECH