Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1383 ATGGAAGAAATGTACGGAGTACCAACAACGGTGGAATACGGCGACAAATCCCTGATGACACCGGAGAATCTAATCTTCCCGGCAGACTACAACAGTTTCCTCATGTCCACCACTTCATCAACCAACCGAATTCCTATGTTCGGATCCGACGATATCTTCACGGCGGCGGAACCTTCTTCCGCCGGAATTCAAGATGACGTGGCATCTAATATCATGAAAGCTAAAATTGCTTCTCATCCTTATTACCCTCGCCTTCTTCAAGCCTATATCGATTGTCAAAAGGTTGGTGCTCCTCCTGAAATTGCAAGTTTATTGGAGGAGATTCGAAGAGAAAACGATATGTGTAAAAGAGACGTTGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGATGAATTTATGGAAAGTTATTGTGACATGCTTGTGAAGTATAAATCAGACCTTACTCGACCTTTTGACGAAGCTACAACGTTTCTGAACAAGATCGAAACTCAACTCAGTCATCTCTGCACTGGTGGTGCTGCTGCTGCTTCACTTCCAACTGCTTCTGATGATGGTGGTGCATCTTCGGACGAAGATCTTAGTACAGGAGATGGTGATGTTCAAGATGGACAATCAAGGGGAGAAGATCGTGAGCTCAAAGATAGGCTTTTACGCAAATTTGGAAGTCACATTGGTACTTTGAAATTGGAGTTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCAAAAGAAGCAAGACAAACCCTACTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATTTTACCGGACGGTTTCTTACTGAAGAATGA 951 0.4227 MEEMYGVPTTVEYGDKSLMTPENLIFPADYNSFLMSTTSSTNRIPMFGSDDIFTAAEPSSAGIQDDVASNIMKAKIASHPYYPRLLQAYIDCQKVGAPPEIASLLEEIRRENDMCKRDVVVSTCFGADPELDEFMESYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHLCTGGAAAASLPTASDDGGASSDEDLSTGDGDVQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFTGRFLTEE* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1383 316 SUPERFAMILY Homeodomain-like 234 307 IPR009057 -
Mtr5g1383 316 SMART ELK_2 213 234 IPR005539 GO:0003677
Mtr5g1383 316 SMART KNOX2_2 121 172 IPR005541 GO:0003677|GO:0005634
Mtr5g1383 316 MobiDBLite consensus disorder prediction 181 214 - -
Mtr5g1383 316 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
Mtr5g1383 316 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 315 - -
Mtr5g1383 316 Gene3D - 232 306 - -
Mtr5g1383 316 ProSiteProfiles ELK domain profile. 213 233 IPR005539 GO:0003677
Mtr5g1383 316 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 38 315 - -
Mtr5g1383 316 ProSiteProfiles 'Homeobox' domain profile. 233 296 IPR001356 GO:0003677
Mtr5g1383 316 Pfam KNOX2 domain 125 171 IPR005541 GO:0003677|GO:0005634
Mtr5g1383 316 Pfam Homeobox KN domain 253 292 IPR008422 GO:0003677|GO:0006355
Mtr5g1383 316 Pfam ELK domain 213 234 IPR005539 GO:0003677
Mtr5g1383 316 CDD homeodomain 245 297 IPR001356 GO:0003677
Mtr5g1383 316 SMART HOX_1 235 300 IPR001356 GO:0003677
Mtr5g1383 316 ProSitePatterns 'Homeobox' domain signature. 271 294 IPR017970 GO:0000981|GO:0006355
Mtr5g1383 316 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1383 Mtr-Chr5 14455772 14464366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1383 1 316 Homeobox Transcription Factor Family AT1G23380 63.855 2.41e-145 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr5g1383 KNOX2 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1383 - - gmx:100794719 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1383 5 14455772 14464366 Mtr5g1383 5 14455772 14464366 ECH