Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1348 ATGGAGGAAGCACTCAACCGTCTCAATGGAACAACGCCTCCAACAATCCAAGAACCTGACACAAAAAAATCCACCAACAAAAGAACCTCACGTGATAACACCGCCTCCGCTGCTGGCGGAGGCGGTGCACTCCGCTACCGCGGAGTTCGCCGCAGACCATGGGGCCGCTATGCAGCTGAGATAAGAGACCCTCAGTCCAAAGAACGCCGCTGGCTTGGAACCTTCGACACTGCTGAAGAAGCAGCATGTGCCTATGACTGTGCTGCACGTGCCATGAGAGGTCTCAAAGCTCGTACAAACTTTGTTTACCCTACTTCTCCTCCTCCTAACACTACTTTTCCTTCTTTCAACTTCCCTAAACATTCTCAAGCTTTTGAAAAAACCTCTACAAATAACCGCCACGTGGCTTCTTGTGGTTGGTCTGAACCACATGGTGTTGATTTTACTCATCAAAGAAACCCTTCAACTTCTTCACTTGACATGCTTCTGTTTCGTGAATTTATCAACTCTTCAAATTCCAACTCTTCTTCTGCTCATAATCACTTTCATGATAACTTTCCTTATTCTTACAACAAAAGTAGTACTAGCTCTGGTTCTGGTTTTGTTGCTGGTTGTTGTATGGCAAATTCTTGCGGAGGGGGTGCAAATAGCAATCATCAAAACACCGGTGTAGATGGGAATAATGGTTCAAAAATTTCAACTGATGAAGATTTTGAGTTTTTTCCTAAAGAATCATCTGATTCTGGATTGTTGGAAGAGATTGTGAATAGGTTTTTGCCAAAACCTAAACAAGAGATTAAGACAGAAATTCTACCAAAGACAACTTTCTGTGACACTTTTGTTCCTAATGCACCTGTGTTTGATCACACGTTAGGAAAAAGTGTTACCAAGAACGAATTTTCAGGTGTTGGGTTTGATCAAAATGGTTTCAATATGCAGCAGTTTGAGAATTTTCACAATGGGTATAATGGATCTTTTCAGTCTCTACCTCTTGGAAATGAACAAATAATGGTGAATCATACTGAGAATTCTGTTATTCAGTATCAAGAGCTTCTTAATGCTTTTGCACTTAGGATGCAAAATGCTTAA 1089 0.4151 MEEALNRLNGTTPPTIQEPDTKKSTNKRTSRDNTASAAGGGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPPNTTFPSFNFPKHSQAFEKTSTNNRHVASCGWSEPHGVDFTHQRNPSTSSLDMLLFREFINSSNSNSSSAHNHFHDNFPYSYNKSSTSSGSGFVAGCCMANSCGGGANSNHQNTGVDGNNGSKISTDEDFEFFPKESSDSGLLEEIVNRFLPKPKQEIKTEILPKTTFCDTFVPNAPVFDHTLGKSVTKNEFSGVGFDQNGFNMQQFENFHNGYNGSFQSLPLGNEQIMVNHTENSVIQYQELLNAFALRMQNA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1348 362 MobiDBLite consensus disorder prediction 1 46 - -
Mtr5g1348 362 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Mtr5g1348 362 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Mtr5g1348 362 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Mtr5g1348 362 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Mtr5g1348 362 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Mtr5g1348 362 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Mtr5g1348 362 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 362 - -
Mtr5g1348 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 15 362 - -
Mtr5g1348 362 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Mtr5g1348 362 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1348 Mtr-Chr5 14067759 14069201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1348 1 274 AP2-EREBP Transcription Factor Family AT1G24590 36.424 1.03e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g1348 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1348 - - gmx:102669715 269.24