Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1340 ATGGATTTTGATGAAGATCAAGAAGAGGAACAAGATGAAGAGTTATGTATGGGTGGAGGAAATTACGACTCTTTACCTAACTCATCAAGAGTTGTTAAGATGCCTGGTGGAACTGAACCTATCATGGTGACTCATCCACTCAGAAACATCCTCAACAACAACAACAACAACAACAACAACAACAATGGAAACAGCAACATAGGTGGTGTTGTTGGAAATGGTAAAGCAAGGTATAGAGAGTGTCTGAAGAATCATGCTGTAGGTATTGGGGGTCATGCTCTTGATGGTTGCGGTGAGTTTATGCCGGCAGGAAGTGAAGGAACTTTGGAGTCACTAAAATGTGCTGCTTGTAACTGCCACCGTAACTTCCACCGAAAAGAGTCATCGGCAGATGTTACTGCCGGTGACCCTTTTCTGTTGACACACCATCATCACCATCCACCACCTCCGCCACAATTCGCGGCTTATTATCGAACTCCAGCGGGGTATTTGCATGTTTCTGGACAGCAGAGGACTGGGACACTTGCTTTGCCGTCTACTTCTGGTGGCGGTGGAGGGACGCAGAGTACGAGGGAAGAGCTTGAAGATGTTTCGAATCCAAGTGGTGGAGGAAGTGGTTCAAGTAAGAAGAGGCATAGGACAAAATTCACGCAGGAACAGAAGGATAAGATGTTGGAGTTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGTAATGAAAGTGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 819 0.4481 MDFDEDQEEEQDEELCMGGGNYDSLPNSSRVVKMPGGTEPIMVTHPLRNILNNNNNNNNNNNGNSNIGGVVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGSEGTLESLKCAACNCHRNFHRKESSADVTAGDPFLLTHHHHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREELEDVSNPSGGGSGSSKKRHRTKFTQEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1340 272 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g1340 272 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
Mtr5g1340 272 MobiDBLite consensus disorder prediction 173 219 - -
Mtr5g1340 272 Gene3D - 195 269 - -
Mtr5g1340 272 MobiDBLite consensus disorder prediction 173 207 - -
Mtr5g1340 272 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 58 271 - -
Mtr5g1340 272 SUPERFAMILY Homeodomain-like 199 270 IPR009057 -
Mtr5g1340 272 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 271 - -
Mtr5g1340 272 MobiDBLite consensus disorder prediction 1 16 - -
Mtr5g1340 272 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Mtr5g1340 272 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 77 127 IPR006456 -
Mtr5g1340 272 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 209 265 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1340 Mtr-Chr5 13930578 13931884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1340 74 268 ZF-HD Transcription Factor Family AT4G24660 52.821 6.60e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr5g1340 ZF-HD_dimer 9.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1340 - - gmx:100808910 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1340 5 13930578 13931884 Mtr8g2131 8 31352431 31353347 PCT