Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1336 ATGGCTGAAAGCTTTGACAGTGCTGAATCTAATCTTTTATGTAGTGAAAACAATAGCACATGTTTTGATGATGTTGTTGTTGATGATTCTGGAATCTCACCTTCTTGGGACCACACAAATGTTAACTTGGACAACGTTGGATCGGATTCATTTCTATGTTTTGTTGCACAAAGTGAGGAAATTGTGAAGGTTATGGTTGAGAAAGAGAAGGATCATTTGCCTAGAGAGGATTATTTGATAAGATTGCGTGGTGGTGATTTGGATTTGAGTGTTAGAAGAGAGGCTCTTGATTGGATTTGGAAGGCTCATGCTTATTATGGATTTGGACCCTTAAGTCTTTGCCTATCTGTCAACTACTTGGATCGATTCCTATCGGTTTTTCAATTTCCGAGAGGTGTGACTTGGACCGTGCAATTGTTAGCTGTAGCTTGCTTCTCACTTGCAGCTAAAATGGAAGAGGTTAAAGTGCCGCAATCTGTAGATTTGCAGGTTGGAGAACCAAAATTTGTATTCCAAGCTAAAACAATTCAGAGAATGGAACTAATGATATTAAGCTCATTGGGATGGAAAATGCGGGCGTTAACTCCTTGTTCCTTCATAGACTACTTCCTTGCTAAGATCAGTTGCGAGAAGTATCCCGACAAGTCATTGATTGCAAGATCAGTTCAGCTCATCCTTAACATAATCAAGGGTATTGACTTCTTGGAATTCAGGTCTTCTGAAATCGCTGCAGCGGTGGCCATTTCTTTAAAGGAACTGCCAACACAAGAAGTTGACAAGGCCATAACTGATTTCTTCATTGTAGATAAGGAGAGAGTTCTAAAGTGTGTTGAATTGATAAGAGATCTTTCCTTGATCAAGGTTGGTGGCAATAATTTTGCATCATTTGTGCCTCAAAGCCCTATAGGGGTTCTTGATGCAGGGTGCATGAGTTTTAAGAGTGATGAATTAACAAATGGATCATGTCCAAATTCTTCACATAGTAGTCCAAATGCTAAAAGGATGAAATTTGATGGACCTTCAAGTGGAACTTCACAATAA 1041 0.3929 MAESFDSAESNLLCSENNSTCFDDVVVDDSGISPSWDHTNVNLDNVGSDSFLCFVAQSEEIVKVMVEKEKDHLPREDYLIRLRGGDLDLSVRREALDWIWKAHAYYGFGPLSLCLSVNYLDRFLSVFQFPRGVTWTVQLLAVACFSLAAKMEEVKVPQSVDLQVGEPKFVFQAKTIQRMELMILSSLGWKMRALTPCSFIDYFLAKISCEKYPDKSLIARSVQLILNIIKGIDFLEFRSSEIAAAVAISLKELPTQEVDKAITDFFIVDKERVLKCVELIRDLSLIKVGGNNFASFVPQSPIGVLDAGCMSFKSDELTNGSCPNSSHSSPNAKRMKFDGPSSGTSQ* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1336 346 MobiDBLite consensus disorder prediction 318 332 - -
Mtr5g1336 346 CDD CYCLIN 92 184 IPR013763 -
Mtr5g1336 346 Pfam Cyclin, C-terminal domain 195 284 IPR004367 -
Mtr5g1336 346 Pfam Cyclin, N-terminal domain 60 191 IPR006671 -
Mtr5g1336 346 PANTHER CYCLINS 53 339 IPR039361 -
Mtr5g1336 346 PANTHER CYCLIN-D4-1-LIKE 53 339 - -
Mtr5g1336 346 Gene3D - 75 192 - -
Mtr5g1336 346 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Mtr5g1336 346 Gene3D - 64 279 - -
Mtr5g1336 346 MobiDBLite consensus disorder prediction 318 346 - -
Mtr5g1336 346 SUPERFAMILY Cyclin-like 49 191 IPR036915 -
Mtr5g1336 346 SMART cyclin_7 97 185 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1336 Mtr-Chr5 13892048 13894672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1336 1 250 Core Cell Cycle Gene Families AT5G65420 54.365 3.45e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1336 K18810 - gmx:100794010 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1336 5 13892048 13894672 Mtr8g2128 8 31296782 31298778 PCT