Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1335 ATGGCTCGTGAGAAGATTCAAATAAAGAAGATTGAAAACTCAACGGCGAGACAAGTGACTTTTTCAAAGAGAAGAAGAGGATTAATCAAAAAGGCTGAAGAACTTTCAGTTTTGTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGGAAACTCTTTGAATACTCCAACTTAAGCATGAGGGAAATACTTGAAAGACATCATTTGCACTCAAAGAATCTGGCAAAGCTTGAAGAACCGTCGCTAGAGTTGCAGCTAGTTGAAAACAGCAACTGTTCTAGATTGAGCAAGGAAGTTGCTCAGAAGAGCCATCAACTAAGGCAGATGAGGGGAGAGGATCTCCAAGGTTTGAGTCTGGAAGAGTTACAACAATTGGAGAAGTCTCTTGAAATTGGATTGGGCCGTGTAATTGAAACCAAGGGAGAGAAGATTATGATGGAGATCAATGAGCTCCAAACAAAGGGAAGACAACTGATGGAAGAGAACAACCGACTAAAGCGACATGTGTCAGGTATGTTTAATGGTAAAATGTTTGGAGGAGTTGAATCTGAGAACATGGTTACTGAAGAAGGTCAATCTTCAGAATCAGTCACCAATGTTTACAACTCTACTGGTCCTCCCCAGGACTATGAGAGCTCAGACACCTCGCTTAAATTGGGGCTTCCATATGCTGGCTGA 684 0.4167 MAREKIQIKKIENSTARQVTFSKRRRGLIKKAEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSKEVAQKSHQLRQMRGEDLQGLSLEELQQLEKSLEIGLGRVIETKGEKIMMEINELQTKGRQLMEENNRLKRHVSGMFNGKMFGGVESENMVTEEGQSSESVTNVYNSTGPPQDYESSDTSLKLGLPYAG* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1335 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1335 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1335 227 Coils Coil 150 170 - -
Mtr5g1335 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr5g1335 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g1335 227 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Mtr5g1335 227 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 224 - -
Mtr5g1335 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Mtr5g1335 227 MobiDBLite consensus disorder prediction 188 217 - -
Mtr5g1335 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1335 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g1335 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g1335 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g1335 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mtr5g1335 227 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1335 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mtr5g1335 227 MobiDBLite consensus disorder prediction 187 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1335 Mtr-Chr5 13870146 13876848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1335 1 227 MADS-box Gene Family AT2G22540 70.833 1.90e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr5g1335 K-box 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1335 - - gmx:100789126 351.673