Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1328 ATGGTTTTACTTCGACAGGGCATGCAGCATGTTCGAAATTACTATAACGGAGAAGCTCAAATGCTAAGAAGCAACTTTTCAAGTTCATTCATCTCGCAAACATTCAAAAGCAGTTTCTCGAAGCAAAGATCAAAGGCAGAGAACAAATTACTGGCAGCTAAGAAACATAGCGAAGCAGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACCCTCCGCAGTATCCTCCCCAACTTGATCAAAAAGGACAAAGCATCAATATTAGTGGAGACTATCAAGCAAGTGAAGGATTTGAAGAAAAAAGCATCAAAACTAGAAGATAGCCATGGTACCTCAAAGGAGATCAAGTTTCCTAGTGGGGCAGACAAATTGAATTTGGAAAAGTGTAATGATGATGAGGGTCTAGTGAAAGCTACATTAAGTTGTGAGGATAGGCCAGGATTGATGTCATCTATATCAAGAGCACTATTGTCAATGAAAGCCAAAGTTGTTAAGGTTGAGATGGTGACAGTAGGTGGAAGAACCAGAAGTGTGCTATGGGTGCAAGGTGTTGAAAATGAAAGTTTGGGAATGCTCAAGAGTACTTTGAAAGTTGTTATGCATAAGCCAAGCTTTAAGATGAGGCAGTATATTCAATAG 645 0.3953 MVLLRQGMQHVRNYYNGEAQMLRSNFSSSFISQTFKSSFSKQRSKAENKLLAAKKHSEAEKRRRMRINGQYDTLRSILPNLIKKDKASILVETIKQVKDLKKKASKLEDSHGTSKEIKFPSGADKLNLEKCNDDEGLVKATLSCEDRPGLMSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENESLGMLKSTLKVVMHKPSFKMRQYIQ* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1328 214 SMART finulus 57 106 IPR011598 GO:0046983
Mtr5g1328 214 Gene3D - 138 210 - -
Mtr5g1328 214 PANTHER TRANSCRIPTION FACTOR BHLH30 9 208 IPR045847 GO:0003700|GO:0006355
Mtr5g1328 214 Coils Coil 90 110 - -
Mtr5g1328 214 PANTHER TRANSCRIPTION FACTOR BHLH131 9 208 - -
Mtr5g1328 214 CDD ACT_UUR-ACR-like 141 191 - -
Mtr5g1328 214 Pfam Helix-loop-helix DNA-binding domain 55 100 IPR011598 GO:0046983
Mtr5g1328 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 112 IPR036638 GO:0046983
Mtr5g1328 214 Gene3D - 42 112 IPR036638 GO:0046983
Mtr5g1328 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Mtr5g1328 214 Pfam ACT domain 141 206 - -
Mtr5g1328 214 SUPERFAMILY ACT-like 139 207 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1328 Mtr-Chr5 13804560 13805832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1328 50 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 42.336 3.75e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g1328 ACT_6 1.6e-05 CL0070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1328 - - gmx:102667782 285.034