Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1315 ATGGATGCAACACAATTAGAGAAAATCTATGTTGCTGTTGGTGATGATGCACAAGATGGATTTAATACTTTGAATTGGGCACTCAAGAAATGGAAATCTCATCCAATTTCCATTGTTATTCTCCATGTTACTCATAACATTTCTAAGGAGTATGTTTATACACCATTTGGGAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTAGAAGCTTTAAGGAAAGATGAGAAAGAGAGAATCAAGAAGTTGTTTTCTAAATATATTGCTTTTTGTGGCAAGGTGTCAGCAGAAATTCTTGAAGTTAAGAAATTTGATGAACCTATGCAAAAACGTGTAATAGACTTGATAACTGAGCTAGAAATTACCAAACTAGTCATGGGATTTTCATTCATGAAGCCTTCCTTGAAATCAAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAACACAAGCCTAGTTTATGTGAATTATTCATTATATGTGGTGGCAAACAAGTTTTTCTAAGGGGAAACAATGATGAAAAAATCATGGAGGATGATAGTGGAGTCATGGTTGCTAAAATGAGAGATAAGGTAACTTTTAAAGATTGGCTAGACAAAATGTTCAGTGACAAAACAAATTATTATTCTCAGAATAGATTAAGTGCATCTCCTTCATCAACCAATTTGGTCCAAAATCAATGGGAGTTTTATCTTCAAGACATAGAAAATTATTATCAAGAGTTGCTATCTTCAAATTTGGAAGAAGGAAGCTACGTGCAGGAAAATGATGGCTTGCACGTTTGTCCAAAATTTGAGCCACACGTCACTGACTTGAACAATTCTAACAAGAGTACTGCAGAAAAAATTGAGATGCTGAAAAATAAGCTAAATGAAGCTCGCAAAACCATTGAGTTGAAGAGGAAAGAGGCTAAGGAAAATATAGAAAGACGCACAAAAGCTGAATGGGCAATTAGCTTATGCAACAGCAGGGCTGAAGAAATTGAAGGTAGAATAAGGGAAGAAGTGAGTACAAAGGAGAACCTAAACAAGGAATTACAATTGGAGAAAGAGCAAAGAGAAGAAATGAGAACAGAAATTAAAGAGAAAAAACAAAGGATGAATTCATTGGTAGAGCTTCAATCAGAACTATCAAACAAGCTTCAATTGTCAACAATGGCAAGATCAAGAGCAGAGACACAAGTAGAGAGAGCAGTGAGGGAGAGAACCGAAATGGTGAGAGAGATAGAGGAGTTAAGGAAGCAAAGAGATGTGTTAAATAGAAGGATTGAATTTTGCAAGCAGAAGGATGCCATAGGCATGGCTGCGAGGCTGAGTGACAACATCACGAGTATTGGAATGAGAGAGTACAGTGAGGAGGAGCTGAGGTTGGCGACCGATAACTTCTCAGAGCGGTTGAGGTTGAAGTCTGGTAGGGATTGGACTAATGTGTATAGAGGACGGTTCAATCATTCCACTGTTGCAATTAAGATGATGTCTTCTTTTCATTCTTTGTCTCAAGAGGAGTTCCAAACCAAGGTGAGGTTTCTCGGTGACATTAGGCAACCACATGTAGTTGCCATGGTAGGCTTCTGCTCCAAGCCCAAATGCATAATTTTGGAATACATGGGCAATGGGAGTTTACAAGACATGTTGTTTTCTAGGAGAAGAAACCGGGGCTTACGTTGGCACGATCGAATACGAATAGCGGCCGAAGTTTGCTCGGGCCTGGCCTTTCTTAATTCATCTTCGCAAAGGCCCATTGTTCATTGTCATTTGAGCCCGGCCCACGTCCTCCTAGACCGAAATTTAGTTGCAAAAATCACAGGCTTTGGGCTTCAAGAGTGTGACGATGACAAGGAATGCAACGTCGAGTCGGATTTACGGGCCTTAGGGATTTTATTGATGCAGCTTTTGACTGGAAGAAATTGGGCCGGGCCCGTTGATGAGCCCATGACTGTGGGTATGGATAGAGAGACTTTGGTTAACATTCTTGATGACATGGCTGGACAATGGCCATTGGATCTAGCAAAAGAACTTGTGGGCCTGGCTATGATTTCCATATCTGTGAAAAGCAAGCCCAACCCAAATCTAAGCATTGGAAGGGTCTTAGAGGAGCTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAGGAAGATAGAAAGGTAATTATTGGTGGATGCATAGATAGAGAGGGCTCTAGTGATGTGCCTAGTGTTTTCCTTTGCCCTATTCTTCAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGATTTTCTTATGAACTGGAAGCAATAGAACAGTGGTTGCATTCAGGGCATGATACATCACCTATGACAAATTTGAGGCTGAAGCACACATCCCTTACACCAAATCATATACTGCGTTCCTTCCTTGAGGAATGGCAGAGCAAGAAATCAGCTAAAATTACAAGTTAA 2427 0.3988 MDATQLEKIYVAVGDDAQDGFNTLNWALKKWKSHPISIVILHVTHNISKEYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSAEILEVKKFDEPMQKRVIDLITELEITKLVMGFSFMKPSLKSKGAISGLFYVHQHKPSLCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKMRDKVTFKDWLDKMFSDKTNYYSQNRLSASPSSTNLVQNQWEFYLQDIENYYQELLSSNLEEGSYVQENDGLHVCPKFEPHVTDLNNSNKSTAEKIEMLKNKLNEARKTIELKRKEAKENIERRTKAEWAISLCNSRAEEIEGRIREEVSTKENLNKELQLEKEQREEMRTEIKEKKQRMNSLVELQSELSNKLQLSTMARSRAETQVERAVRERTEMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLSDNITSIGMREYSEEELRLATDNFSERLRLKSGRDWTNVYRGRFNHSTVAIKMMSSFHSLSQEEFQTKVRFLGDIRQPHVVAMVGFCSKPKCIILEYMGNGSLQDMLFSRRRNRGLRWHDRIRIAAEVCSGLAFLNSSSQRPIVHCHLSPAHVLLDRNLVAKITGFGLQECDDDKECNVESDLRALGILLMQLLTGRNWAGPVDEPMTVGMDRETLVNILDDMAGQWPLDLAKELVGLAMISISVKSKPNPNLSIGRVLEELNKIRRKGDEIVAKEDRKVIIGGCIDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTSLTPNHILRSFLEEWQSKKSAKITS* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1315 808 ProSiteProfiles U-box domain profile. 731 805 IPR003613 GO:0004842|GO:0016567
Mtr5g1315 808 Coils Coil 388 429 - -
Mtr5g1315 808 SUPERFAMILY Protein kinase-like (PK-like) 441 658 IPR011009 -
Mtr5g1315 808 Coils Coil 269 310 - -
Mtr5g1315 808 ProSiteProfiles Protein kinase domain profile. 451 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1315 808 Gene3D Phosphorylase Kinase; domain 1 434 536 - -
Mtr5g1315 808 SUPERFAMILY RING/U-box 729 804 - -
Mtr5g1315 808 Gene3D Transferase(Phosphotransferase) domain 1 537 721 - -
Mtr5g1315 808 PANTHER OS02G0152300 PROTEIN 5 801 - -
Mtr5g1315 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 807 IPR013083 -
Mtr5g1315 808 Pfam Protein tyrosine and serine/threonine kinase 474 612 IPR001245 GO:0004672|GO:0006468
Mtr5g1315 808 Pfam U-box domain 732 803 IPR003613 GO:0004842|GO:0016567
Mtr5g1315 808 CDD RING-Ubox_WDSUB1_like 736 777 - -
Mtr5g1315 808 SMART Ubox_2 735 798 IPR003613 GO:0004842|GO:0016567
Mtr5g1315 808 Coils Coil 325 380 - -
Mtr5g1315 808 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1315 Mtr-Chr5 13633134 13638192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1315 3 808 U-box Gene Family AT5G65500 48.407 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mtr5g1315 PK_Tyr_Ser-Thr 7.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1315 - - gmx:100786771 1196.8