Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1314 ATGGCTCGTGCTACTACTACAAATTCAAATAATAACTGGCTATCATTTTCACTTTCACCCATGGAAATGCCTCAGTTTGTTCAATATGACCAAGCTTCTTCCGTTACTACTAACTCCTCTCATCAAAATCATCATAACTATTTCCTTGACAACTTGTATACTCATAATGGGTGGGGAAACGGAACCAAAGCAGAAGAACAAGAACAATCAATCTGGTTTGTGGATTCATCAAACACTGTTAACCACACTCCACCACCAAAGCTAGAAGATTTTCTAGGTGACAGTCAAACAGAAACACAAGATTCATCACTCACAAACATGTATGATCATCATCACTACTTCGGTGGGGACCACTCCCAGCACCAACACCAACAACACCACCAGGATCTTACTGGTTTTCAAGCTTTTTCAAACAACAACTCTGGCTCTGAAGTTGATGATTCTGGTTCAATAGGGAAATCAGGACAAGCTGCATGTGGGAATGAGTTTGGTACAACTCATTGTGTTGAGTCTGTGAATGAGTATGCTTACTCCACCGCTGCTGCGGCAGCGGTGGGGGCTAATGGAACTCTGTCGCTCGGTGTTGCGCAGAGTTCCGAGGAAAATGCTATTGTTGCTGTTGCTGCTGATTCTGATAGCTCTAAGAAGATTGTTGATACTTTTGGTCAAAGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACAGGAAGATATGAAGCCCATCTATGGGATAACAGCTGTAGAAGAGAAGGTCAAGCTAGGAAGGGTCGTCAAGTCTATTTGGGTGGATATGACAAAGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGGCCCACTGCTACTACCAACTTCCCTGTTTCCAATTATGCAAAAGAATTGGAAGAGATGAAGAATGTAACAAAGCAAGAATTCATTGCTTCATTGAGAAGGAAGAGTAGTGGCTTCTCAAGAGGAGCTTCCATCTACCGGGGTGTCACAAGGCATCACCAACAGGGTAGGTGGCAAGCAAGAATTGGTCGTGTTGCCGGGAACAAAGACTTGTATCTTGGAACATTCGCAACTGAAGAGGAAGCTGCAGAGGCCTATGACATTGCGGCCATAAAGTTCCGAGGCGCAAACGCGGTGACAAACTTTGAGATGAACAGATATGACGTGGAAGCGATAATGAAGAGCTCTCTTCCAGTTGGCGGAGCAGCTAAACGCCTGAAGCGTTCTCTAGAATCAGAACAGAAAGCTTCTGCTGACAACAACATTCAACAGAACAACTCTCAACAAAGTGCTGCAAACTTGACTAACAGCAGCAGCAGCAACAACATCAACTTCTCAGCTATTCAACATCAGCAACCAATGGCTTCAATTCCTTATGGTATTCCGTATGACTCGAATACGGCTTACTATCATCACAACCTCTTCCAGCATTTTCATGCTAGTACCAATGATGGCGCTGCAGAATCAGCAGCGAATGGAGGACTCAATGCCATGCCACCAACATCGGCTGAGTTCTATTTATGGCCAAATCAGTCCTATTGA 1554 0.4421 MARATTTNSNNNWLSFSLSPMEMPQFVQYDQASSVTTNSSHQNHHNYFLDNLYTHNGWGNGTKAEEQEQSIWFVDSSNTVNHTPPPKLEDFLGDSQTETQDSSLTNMYDHHHYFGGDHSQHQHQQHHQDLTGFQAFSNNNSGSEVDDSGSIGKSGQAACGNEFGTTHCVESVNEYAYSTAAAAAVGANGTLSLGVAQSSEENAIVAVAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKNVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKASADNNIQQNNSQQSAANLTNSSSSNNINFSAIQHQQPMASIPYGIPYDSNTAYYHHNLFQHFHASTNDGAAESAANGGLNAMPPTSAEFYLWPNQSY* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1314 517 Gene3D AP2/ERF domain 329 389 IPR036955 GO:0003700|GO:0006355
Mtr5g1314 517 Gene3D AP2/ERF domain 227 295 IPR036955 GO:0003700|GO:0006355
Mtr5g1314 517 SUPERFAMILY DNA-binding domain 226 295 IPR016177 GO:0003677
Mtr5g1314 517 SMART rav1_2 227 299 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 SMART rav1_2 329 393 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 10 493 - -
Mtr5g1314 517 ProSiteProfiles AP2/ERF domain profile. 227 293 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 ProSiteProfiles AP2/ERF domain profile. 329 387 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 CDD AP2 226 295 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 MobiDBLite consensus disorder prediction 412 442 - -
Mtr5g1314 517 Pfam AP2 domain 227 285 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 Pfam AP2 domain 329 379 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 MobiDBLite consensus disorder prediction 419 442 - -
Mtr5g1314 517 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 PRINTS Ethylene responsive element binding protein signature 369 389 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 SUPERFAMILY DNA-binding domain 328 388 IPR016177 GO:0003677
Mtr5g1314 517 CDD AP2 328 387 IPR001471 GO:0003700|GO:0006355
Mtr5g1314 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1314 Mtr-Chr5 13591541 13596506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1314 73 517 AP2-EREBP Transcription Factor Family AT5G10510 57.061 1.23e-159 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr5g1314 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1314 K09285 - gmx:100775390 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1314 5 13591541 13596506 Mtr8g2104 8 31046538 31052240 PCT