Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1313 ATGGAATCAAAGGGCAATAACAAAAAACAGTTTTCAAGCGACGATGAAGCATCACCAAGAGCAATACTAGATGCCCCTGTTTCAGGAACAGAGTCAGACAATAGTGGAAGCAGCAGTTTCTCCTCGTACTCATCGGAGAATTCACCACCGGTGGAGGGAAAATTAGGTTGGAAGGAAAGTAACATGATGCAATGGAAATCAATGATTGATGTTTTCAAGTTCAAGTCAGTGAGAAGATTAACAGCTATTCCATTGCTTGCTGCTGTTAACAATGATATTGCTAAGACAGGTTTCCCTAGAAAATTGGCTAGGATTCGAAGTGCTGAAGAAAGTATTGACATTGGTGCTATTCCTACTAAACCTTCTTGGAGGAATTTTGATTATGATGAACTTGCTGCTGCTACTAATGATTTCAGTTCAGAGAACTTGATTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGACACTTATCAGATGGTCAAGTTGTCGCAGTAAAGAGACTAATGAAGAACGACAAGGATTTCGCGGATAGAGCAGGCGATTTCTTAACAGAGCTTGGAATCATTGCACACGTTAATCACCCGAACGCTACACGCCTTGTTGGGTTTGGTATCGACCGCGGCCTCTACTTTGTCCTACAATTAGCACCATATGGAAGTCTTTCTTCTTTGTTATTTGGTTCTGAATGCTTAGAGTGGAAGACAAGGTACAAGGTGGTTATCGGAGTAGCCGAGGGGTTGCATTATCTCCATGAAGATTGTCCCAGACGAATCATTCACAGGGATATCAAAGCCTCAAACATATTACTCAATGATAATTATGAAGCCGAGATATCAGATTTTGGACTGGCAAAGTGGCTTCCAAATAATTGGGCACACCACGTTGTTTTTCCTATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTACTTTATGCATGGTGTTGTGGATGAGAAGACAGATGTATTCGCATTCGGCGTTTTACTACTCGAACTCATAACAGGTCGTCGTGCAGTTGATTCCGATAGTAAGCAAAGTCTTGTGATTTGGGCCAAGCCACTTCTTGACTCAAAAAATGTCCAAGAGCTAGCAGATCCTAGATTAGAAGAGAAATATGATCCCACCGAAATGAACCGTGCCATGAAGACAGCTTCCTTGTGCGTCCACCATTCATCCTCCAAGCGGCCATTCATGAAACAAGTTGCGCAACTACTGAAGGGCGAGGAAGCAATTATAGATTCCAAACATCATTCAGGTGCTTCAAGATCACTCTCGTTAGAAGCATGTGACTTAGAAGATTATACTTGCTCTAGTTACTTGAAGGACCTCAACCGCCATAGGGAATTAGTCATGGAGTGA 1359 0.4231 MESKGNNKKQFSSDDEASPRAILDAPVSGTESDNSGSSSFSSYSSENSPPVEGKLGWKESNMMQWKSMIDVFKFKSVRRLTAIPLLAAVNNDIAKTGFPRKLARIRSAEESIDIGAIPTKPSWRNFDYDELAAATNDFSSENLIGKGGHAEVYKGHLSDGQVVAVKRLMKNDKDFADRAGDFLTELGIIAHVNHPNATRLVGFGIDRGLYFVLQLAPYGSLSSLLFGSECLEWKTRYKVVIGVAEGLHYLHEDCPRRIIHRDIKASNILLNDNYEAEISDFGLAKWLPNNWAHHVVFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLELITGRRAVDSDSKQSLVIWAKPLLDSKNVQELADPRLEEKYDPTEMNRAMKTASLCVHHSSSKRPFMKQVAQLLKGEEAIIDSKHHSGASRSLSLEACDLEDYTCSSYLKDLNRHRELVME* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1313 452 SMART serkin_6 138 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1313 452 MobiDBLite consensus disorder prediction 1 15 - -
Mtr5g1313 452 Gene3D Phosphorylase Kinase; domain 1 113 213 - -
Mtr5g1313 452 MobiDBLite consensus disorder prediction 1 55 - -
Mtr5g1313 452 Gene3D Transferase(Phosphotransferase) domain 1 217 423 - -
Mtr5g1313 452 ProSitePatterns Protein kinases ATP-binding region signature. 144 166 IPR017441 GO:0005524
Mtr5g1313 452 SUPERFAMILY Protein kinase-like (PK-like) 122 405 IPR011009 -
Mtr5g1313 452 MobiDBLite consensus disorder prediction 28 49 - -
Mtr5g1313 452 Pfam Protein kinase domain 139 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1313 452 ProSiteProfiles Protein kinase domain profile. 138 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1313 452 PANTHER OS08G0249100 PROTEIN 6 452 - -
Mtr5g1313 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Mtr5g1313 452 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 6 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1313 Mtr-Chr5 13580112 13585727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1313 111 435 Trihelix Transcription Factor Family AT5G38560 42.286 2.36e-75 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mtr5g1313 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1313 - - gmx:100818314 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1313 5 13580112 13585727 Mtr8g2102 8 30997799 31001655 PCT