Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1297 ATGGCAAGACAACCTGAATTTGAGCATTCAAAGAAGGCCTTTGGTTGGGCAGCTAGAGACTCTTCTGGTGTTCTCTCTCCTTTCAATTTCTCCAGAAGGGAAATATGCGAAAAAGACGTAGCATTAAGAGTGTTGTATTGTGGAATATGTCACTCGGACCTTCATAAGGCGAAGAATGAATGGGGCACTACGAACTATCCACTAGTTCCCGGACATGAAATTGTTGGCATAGTTACAGAAGTGGGAAGCAAAGTGAAAAAGTTCAAAGTTGGAGACAGAGTAGGTGTGGGATGCTTGGTTGATTCTTGTCACTCATGTCAAAATTGTGTTGATAATCTTGAGAATTACTGTCCCCAATTGACACTCACTGATGGTTCCAAATACAGTGATGGAACCAGCACTCATGGAGGCTTCTCTGACTCAATGGTTTCCGACGAGCACTTTGTGTTTCGCATTCCAGATCAGTTACCTCTTGATGCAGCTGCTCCTCTCCTTTGTGCTGGGATAACCGTATATAGTCCTCTTCGACATTTTGGACTCGACAAGCCTGATATGAATATAGGTGTTGTTGGTCTTGGTGGACTTGGCCATATGGCCGTGAAATTCGCCAAAGCTTTCGGTGCTAATGTGACCGTAATTAGTACATCACCTAAAAAGGAAAAGGAAGCATTAGAACACTTACGAGCGGACTCATTTCTAATAAGCCGTGATCCAAAGCAGATGAAGGCTGCAACGGCTACTTTGGATGGTATTATCGACACAGTTTCAGCGGATCATCCGCTATTACCTCTGATTGGTTTACTCAAGTCTCATGGAAAGCTTGTAATGGTTGGTGCACCTGAAAAGCCTCTAGAGCTTCCTGTTTTTCCTTTACTTGCAGGGAGAAAGATAGTAGCAGGAAGTTTGATTGGAGGGATCAAGGAGACTCAAGAAATGATTGATTTTGCGGCGGAACACAATGTAAAGCCTGATATTGAGATCATTCCTATTGATTATGTCAACACAGCGATGGAGCGCCTTCTTAAAGCAGATGTGAAATATCGATTTGTGATTGATATTGGAAACACATTAAAATCAAGCTCTTGA 1086 0.4273 MARQPEFEHSKKAFGWAARDSSGVLSPFNFSRREICEKDVALRVLYCGICHSDLHKAKNEWGTTNYPLVPGHEIVGIVTEVGSKVKKFKVGDRVGVGCLVDSCHSCQNCVDNLENYCPQLTLTDGSKYSDGTSTHGGFSDSMVSDEHFVFRIPDQLPLDAAAPLLCAGITVYSPLRHFGLDKPDMNIGVVGLGGLGHMAVKFAKAFGANVTVISTSPKKEKEALEHLRADSFLISRDPKQMKAATATLDGIIDTVSADHPLLPLIGLLKSHGKLVMVGAPEKPLELPVFPLLAGRKIVAGSLIGGIKETQEMIDFAAEHNVKPDIEIIPIDYVNTAMERLLKADVKYRFVIDIGNTLKSSS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1297 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Mtr5g1297 361 SUPERFAMILY GroES-like 20 183 IPR011032 -
Mtr5g1297 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Mtr5g1297 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Mtr5g1297 361 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 360 - -
Mtr5g1297 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Mtr5g1297 361 PANTHER ALDEHYDE REDUCTASE 1 360 - -
Mtr5g1297 361 CDD CAD1 14 352 - -
Mtr5g1297 361 Gene3D - 167 323 - -
Mtr5g1297 361 Gene3D - 16 353 - -
Mtr5g1297 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1297 Mtr-Chr5 13364082 13366377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1297 10 358 Monolignol Biosynthesis Gene Families AT4G37990 71.347 1.40e-169 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1297 - K23232 gmx:100816901 603.594