Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1288 ATGGTTATAACATCTACCACATACTCTTGTTATATAACTTGTGGATTTTGGTTCTTACCATTTCATCAATATCCTTTCACTTTCTCTGCAATTGAAATGGCCTCAAAACCAGAAACTGAACATCCCAAACAAGCTTTCGGCTGGGCTGCTAGGGACACATCTGGAGTCCTTTCTCCTTTCAAGTTCTCTAGAAGGGAAACAGGGGAGAAGGATGTGGCATTCAAAGTACTATTTTGCGGTATATGTCACTCGGACCTCCATATGGCGAAGAATGAGTGGGGCAGTACTACTTACCCAGTAGTTCCTGGACATGAAGTTGCTGGTGAAGTGACAGAGGTGGGAAGCAAGGTGAAAAACATCAAAGTTGGAGATAGGGTTGGTGTGGGGTGCATGGTTGGATCCTGCCATTCATGTCAAAGTTGTGGCGAGGATCTCGAAAATTATTGCTCAAAGATGATTCAGACATACAGTTCCAAGAATGTTGATGGCACTATCACATATGGAGGCTACTCTGACACCATGGTTGTCGACGAACACTTTATTGTCCGTATTCCCGATGCCTTATCACTTGATGCTGCCGCTCCTCTCCTTTGTGCTGGGATCACAGTGTATAGCCCAATGAAACATTTTGGATTTGACAAACCTGGACTGCATATAGGTGTGGTTGGTCTTGGTGGATTAGGTCATATGGCTGTGAAGTTCGCCAAAGCCTTTGGTGTTAAGGTAACTGTGGTAAGTACTTCTCCTAACAAAAAGAAGGAAGCCATTGAACGCTTAGGAGCTGACTCATTCGTGGTTAGTCGCGAACAAGACCAGATGAAGGCTGTAATGGGAACGTTTGATGGAATCATCGACACTGTTTCAGCACTCCATCCTCTAATGCCTTTGCTTGGTCTATTGAAGAATAATGGTAAACTTGTTATGGTTGGAGCTCCAGAGAAGCCTTTGGAGTTTCCAGTATTTTCTTTGATTGTGGGGAGAAAGACAATTGGTGGGAGTATGATTGGAGGGATGAAGGAAACACAAGAAATGATTGATTTTGCAGCCAAACATGGCGTAAAACCTGATATTGAGGTTGTTCCAGTGGATTATGTAAATACTGCAATGGAACGCTTAGTCAAAGCTGATGTGAAATATCGATTTGTTATTGACATTGGAAACACAATGAAGGCAAGCTCTTAA 1182 0.4298 MVITSTTYSCYITCGFWFLPFHQYPFTFSAIEMASKPETEHPKQAFGWAARDTSGVLSPFKFSRRETGEKDVAFKVLFCGICHSDLHMAKNEWGSTTYPVVPGHEVAGEVTEVGSKVKNIKVGDRVGVGCMVGSCHSCQSCGEDLENYCSKMIQTYSSKNVDGTITYGGYSDTMVVDEHFIVRIPDALSLDAAAPLLCAGITVYSPMKHFGFDKPGLHIGVVGLGGLGHMAVKFAKAFGVKVTVVSTSPNKKKEAIERLGADSFVVSREQDQMKAVMGTFDGIIDTVSALHPLMPLLGLLKNNGKLVMVGAPEKPLEFPVFSLIVGRKTIGGSMIGGMKETQEMIDFAAKHGVKPDIEVVPVDYVNTAMERLVKADVKYRFVIDIGNTMKASS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1288 393 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 33 392 - -
Mtr5g1288 393 SMART PKS_ER_names_mod 55 383 IPR020843 GO:0016491
Mtr5g1288 393 Gene3D - 199 355 - -
Mtr5g1288 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 354 IPR036291 -
Mtr5g1288 393 CDD CAD1 46 384 - -
Mtr5g1288 393 SUPERFAMILY GroES-like 52 216 IPR011032 -
Mtr5g1288 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 103 117 IPR002328 GO:0008270|GO:0016491
Mtr5g1288 393 PANTHER ALDEHYDE REDUCTASE 33 392 - -
Mtr5g1288 393 Pfam Zinc-binding dehydrogenase 226 349 IPR013149 -
Mtr5g1288 393 Pfam Alcohol dehydrogenase GroES-like domain 70 183 IPR013154 -
Mtr5g1288 393 Gene3D - 48 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1288 Mtr-Chr5 13289249 13291461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1288 43 392 Monolignol Biosynthesis Gene Families AT4G37990 72.000 1.74e-171 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1288 - K23232 gmx:100809071 578.941