Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1286 ATGAAGATGAACATGAGTGGAAGGGTTCTCTTGTTGTGGTGGTACATAATGGCTTTGCAACTTTGTTTCACGTTTGGTTCCTATTTAGAATATATCTCATTCAGAAGAAGCGTAAGAGGATTGCCTAATGCTCAATCTTCAGTCACTATAAATCGTCAAAATTCTCAGCAGGTGGTGATTAGCAATGGCATCATGTCCCTTACTTTGGCAAATCCAGGGGGGTATGTCTTAGGAATATCATATGCTGGAATGGAAAATGTACTTGAAGCTGGAAATGAAGCTGATGATAGAGGGTACTTTGACGTTGTTTTTGGCAAAACATTTCAAAGAGTTCATGGGACAAGTTTCTCAGTCGTAACACAAAACGAGCATATAGTGGAGGTTTCATTTTTAAGGGCATGGAGTTCTTCTATGGGTGTCTCAAGTGTCCCTATAAACATAGACCAAAGGTATATAGTGAGAAAAGGCGATTCTGGATTTTACACTTACGTGGTATTTGAACGACCAAAAGGATTCCCTGCTATTAAAGTTGATCAAATAAGGACCGTTTTTAAACCTAAGGAAGCCAGCTTCAACTATATGGCCATATCAGATATTAGGCAAAGAAGAATGGCATCAATGAAAGATAGAGATGATGGTCAAAAACTGGCTTATCCTGAAGCTGTTCTCTTAACACGTCCATCTAATCCACAATTTAAGGGAGAGGTTGATGATAAATATCAATACTCCGTTGAGAATCAATACAATCAAGTTAATGGATGGATTACCGCAGATTCTGAAAAACCCGTGGGTTTTTGGATCATAACACCGAGTAATGAGTTCCGTAATGGTGGGCCCGTTAAGCAAGATCTCACATCTCATGTTGGCCCAATTTGCCTCTCTATGTTTGTAAGCACCCACTATGCTGGTAAAGACGTAGCCATCCAATTTCAACAAGGAGAGACTCATAAAAAGGTTTTCGGGCCTATCTTTGTTTACTTGAATTCTGCTCCAAGTAAAGATCAATTTAAATCTCTATGGTCAGATGCTAAACAAAAGCTATCGAATGAACTCAAAAGTTGGCCTTATAATTTTATTCAATCAAAAGATTTCATTCCACCTAATCAACGTGGAACCCTAACCGGACATTTACAAGTCCAAGACGGGGGCGGCAAATCTCAAAATGCTAAGAATGCATACATTGGTCTAGCTTTGCCTGGGGATGCAGGATCATGGCAGAGAGAAAGCAAGGGATATCAATTTTGGATTAGAGCAGACCAAAACGGAAACTTTGTTATAAAAAACATTGTACCTGGGTCATACAACTTGTTTGCATGGGTTCCTGGCTACATTGGAGATTACAAATATAATTCTCCAATTACAATTAAACCAGGAGGCACCATCAACTTGAATTCGCTTGTTTATAATCCTCCAAGAAATGGCCCAACTGTATGGGAAATTGGCATTCCAGATCGCTCAGCTGGAGAATTTTTTGTACCAAAGCCTTACTCTAACCTCTTGAACAGATTATTCACGAATGACATCCCAGACCAGTTTAGGCAATATGGAATATGGAGCCGTTACAGCGATTTATATCCAACTCAGGATCTTGTTTACACAGTTGGTGTTAGTAACTATCGAAAGGATTGGTTTTATGCTCATGTTCCCAGGAGCACAGGAAATAATAAATTTCAAGCAACCACATGGAAGATTATATTTGAACATGGTGCTGTAATAAGTGGAAACTACACATTACAACTTGCCCTAGCAAGTGCCTCTAATGCTGAAGTGCAGGTTTGGTTCAATAACATGAATGCCAATACTCCCTACTTCACAACAAAGAGAATAGGAGATGATAATGCCATACCAAGGCATGGAATCCATGGATTATATTGGTTGTTTACCATAGAAGTACCTAGTATTCATTTGGTAAAAGGAAAAAATACAGTATTTTTGAGACAATCAAGATTTGACTCATTTTGGCAAGGAGTTCTATATGATTATATCCGGTTAGAGAGTCCTCCAACAACCAAGTTGAAAGTGTGA 2025 0.3886 MKMNMSGRVLLLWWYIMALQLCFTFGSYLEYISFRRSVRGLPNAQSSVTINRQNSQQVVISNGIMSLTLANPGGYVLGISYAGMENVLEAGNEADDRGYFDVVFGKTFQRVHGTSFSVVTQNEHIVEVSFLRAWSSSMGVSSVPINIDQRYIVRKGDSGFYTYVVFERPKGFPAIKVDQIRTVFKPKEASFNYMAISDIRQRRMASMKDRDDGQKLAYPEAVLLTRPSNPQFKGEVDDKYQYSVENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLSMFVSTHYAGKDVAIQFQQGETHKKVFGPIFVYLNSAPSKDQFKSLWSDAKQKLSNELKSWPYNFIQSKDFIPPNQRGTLTGHLQVQDGGGKSQNAKNAYIGLALPGDAGSWQRESKGYQFWIRADQNGNFVIKNIVPGSYNLFAWVPGYIGDYKYNSPITIKPGGTINLNSLVYNPPRNGPTVWEIGIPDRSAGEFFVPKPYSNLLNRLFTNDIPDQFRQYGIWSRYSDLYPTQDLVYTVGVSNYRKDWFYAHVPRSTGNNKFQATTWKIIFEHGAVISGNYTLQLALASASNAEVQVWFNNMNANTPYFTTKRIGDDNAIPRHGIHGLYWLFTIEVPSIHLVKGKNTVFLRQSRFDSFWQGVLYDYIRLESPPTTKLKV* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1286 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 50 669 - -
Mtr5g1286 674 CDD RGL4_N 54 335 - -
Mtr5g1286 674 Gene3D - 47 342 IPR014718 GO:0030246
Mtr5g1286 674 CDD RGL4_M 369 466 IPR029413 -
Mtr5g1286 674 Gene3D - 474 665 - -
Mtr5g1286 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 50 669 - -
Mtr5g1286 674 Pfam Polysaccharide lyase family 4, domain II 390 463 IPR029413 -
Mtr5g1286 674 SUPERFAMILY Galactose mutarotase-like 54 331 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mtr5g1286 674 CDD RGL4_C 478 665 - -
Mtr5g1286 674 SUPERFAMILY Starch-binding domain-like 365 465 IPR013784 GO:0030246
Mtr5g1286 674 Pfam Polysaccharide lyase family 4, domain III 476 664 IPR029411 -
Mtr5g1286 674 Pfam Rhamnogalacturonate lyase family 44 236 IPR010325 -
Mtr5g1286 674 Gene3D - 365 465 - -
Mtr5g1286 674 SUPERFAMILY Galactose-binding domain-like 473 665 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1286 Mtr-Chr5 13276120 13282187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1286 57 667 Polysaccharide Lyase AT1G09890 52.648 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1286 K18195 - gmx:100781089 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1286 5 13276120 13282187 Mtr8g2087 8 30854575 30862496 PCT