Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1279 ATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAACTGTACAAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAATTAGCAATCCTATGTGATGCACAAGTTGGACTTGTTATATTTTCCAGCACGGGAAAGCTGTATGAATATGCAAACACCAGCATGAAATCAGTGATTGAGAGATATAACATTTGCAAGGAAGACCAACAAGTGACAAATCCAGAATCAGAAGTCAAGTTTTGGCAAAGGGAGGCAGACATTTTAAGGCAGCAACTACAAAGTCTACAAGAAAACCATAGGCAATTGATGGGAGAACAGCTTTATGGTTTGAGTATCAGAAACCTACAAGACCTAGAGAGTCAGCTGGAACTTAGCCTACAAGGAGTTCGCATGAAAAAGGAGAAAATTCTGACAGATGAAATCCAAGAGCTGAACCGAAAGGGAAGCATAATCCATCAAGAAAATGTAGAGCTCTATAAGAAGGTGTATGGCACGACAGATAATGAGGCAACCGCAACAAGCAAAAACGCGTTTGTTCAATTTCCATATAGTGTTCGTGGAGGCGGAGAATATCCACAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCAAGAATACTGCGAGACCTCAGGCAGTGCAAGTGCAACAAAATGA 678 0.4145 MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANTSMKSVIERYNICKEDQQVTNPESEVKFWQREADILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGSIIHQENVELYKKVYGTTDNEATATSKNAFVQFPYSVRGGGEYPQTLFQLQLCQPEQEYCETSGSASATK* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1279 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1279 225 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Mtr5g1279 225 Pfam K-box region 80 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1279 225 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1279 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr5g1279 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g1279 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g1279 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g1279 225 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 221 - -
Mtr5g1279 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g1279 225 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mtr5g1279 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1279 225 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mtr5g1279 225 Coils Coil 85 112 - -
Mtr5g1279 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1279 Mtr-Chr5 13197448 13210976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1279 1 222 MADS-box Gene Family AT4G37940 60.090 4.17e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr5g1279 K-box 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1279 K09264 - gmx:100795778 338.961