Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1274 ATGAAAACACAAGGTCTTGAACTTGAAACAGTGATTGACATAAAGCATAAACCTGTTAGTTTCACTGGAGGACTTGAATTTGAATCTCTTACATACACAGTGACAAAGAAGAAGAAAGTTGATGGAAAATGGTCGAATGAAGATGTGGATTTGTTGCATGATATAACAGGTTATGCACCAAAGGGTTGTATCACTGCAGTAATGGGACCAAGTGGTGCTGGAAAATCAACTTTATTGGATGGACTTGCTGGGAGAATTGCAAGTGGGAGTCTTAAAGGAAAAGTTTCATTGGATGGAAATAGTGTGAATGCAAGCTTGATTAAAAGAACTTCTGCTTATATTATGCAAGAAGATAGGCTTTTTCCTATGCTTACTGTCTATGAGACTTTGATGTTTGCTGCTGATTTCAGATTAGGGCCACTTTCAGCTGTTGATAAGAGGCAGAGAGTTGAGAAGCTTATTGAGCAGCTTGGCTTATCATCATCTAGGAACACCTACATAGGAGATGAAGGCACAAGAGGAGTCTCTGGTGGAGAGCGCCGCAGAGTCTCAATTGGCGTAGACATAATCCATGGACCTTCACTCCTTTTCCTAGATGAACCAACTTCAGGACTAGACTCAACAAGTGCTCTTAGTGTGATCGAAAAACTACATGACATAGCAAGAAATGGTAGCACAGTTATTCTCACAATCCACCAACCTTCATCAAGAATCCAGCTTCTGCTTGACCATCTCATCATCCTTGCTAGAGGACAACTCATGTTTCAAGGATCACTAAAAGATGTTGGTCACCATTTGAATCGAATGGGACGAAAAATTCCTAAAGGAGAGAATCCAATTGAGAATCTCATTGATGTGATACAAGAGTATGATCAGTGTGATTTTGTTGGTGTTGAGGTGCTAGCTGAGTTTGCACGTACCGGAATGAAACCACCTCTTTTGAGTGATATGGAGGAAATAATTTCATATACTAATTCCATTGCACCTTCACCATCTCCTTTGCATAGAGGATCTAAATATGAGGAAAAATCTCAAGATTTCTCTTATTCATCACAAATTAGCAGAAGGAGTTTGAATGATGAGTTTGATCATAGTATTAGAAGTCCATATAATAACACACCAATGTCATGGAGTGCTAGTAATAGTGCAGCTTTCTTGAAATTCACACCCTCAAGACTTAAAAATGAGAACAAGGTGCAAAAGCCTCCAAGCCATGCTTCCCCTGGCATCTACACATACTCAAGTGAAATCCTTCCAGCAACACCAACACCACATAGCAGTGACTACGTAGTCGACGAGAATGACTACCTTACACCAACAAATAGCTCACAAGAACATCTAGGTCCAAAGTTTGCAAATTCCTACATAGGAGAGACATGGATCCTAATGCGCCGCAACTTCACAAACATACGGAGAACCCCCGAGCTTTTTCTATCAAGACTAATGGTCCTCACCTTCATGGGAGTTATGATGGCAACAATGTTCCACAATCCAAAAAATACCTTACAAGGAATCACAAATCGTCTCAGTTTCTTCATTTTCACAGTGTGTCTGTTTTTCTTCTCTTCAAATGATGCCGTCCCTGCCTTCATCCAAGAGAGGTTCATCTTCATCCGCGAAACTTCTCATAATGCCTATAGAGCTTCTTGTTACACCATAGCTAGCCTAATCACTCACATGCCGTTTCTTGCGCTCCAAGCTTTAGCCTATGCTGCCATTGTTTGGTTTGCTTTAGAACTTAGAGGCCCATTTATATACTTCTTCCTTGTTCTCTTCATTTCTCTTCTTTCGACAAATTCGTTTGTTGTGTTTGTGAGTTCAATTGTTCCAAACTATATCTTGGGTTATGCTGCTGTGATAGCCTTCACTGCCTTGTTTTTCTTGTTTTGTGGATACTTCTTGAGCAGCGAGGATATTCCGCTTTATTGGCGTTGGATGAACAAGGTTTCGACAATGACATACCCTTATGAAGGACTCTTGATGAATGAGTATCAGACTAATGAAACTTTTGGATCAAATGATGGTGTATCTATTACTGGTTTTGATATTTTGAAAAGTCTTCATATTGGTACTGAAGAGATTAAGAAAAGGAACAATGTGCTTATAATGTTAGGTTGGGCTGTTCTATATAGGATTTTATTTTACATTATTCTTCGTTTTGCATCAAAAAATCAAAGGTCCTAG 2184 0.3947 MKTQGLELETVIDIKHKPVSFTGGLEFESLTYTVTKKKKVDGKWSNEDVDLLHDITGYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGNSVNASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSAVDKRQRVEKLIEQLGLSSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSALSVIEKLHDIARNGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSLKDVGHHLNRMGRKIPKGENPIENLIDVIQEYDQCDFVGVEVLAEFARTGMKPPLLSDMEEIISYTNSIAPSPSPLHRGSKYEEKSQDFSYSSQISRRSLNDEFDHSIRSPYNNTPMSWSASNSAAFLKFTPSRLKNENKVQKPPSHASPGIYTYSSEILPATPTPHSSDYVVDENDYLTPTNSSQEHLGPKFANSYIGETWILMRRNFTNIRRTPELFLSRLMVLTFMGVMMATMFHNPKNTLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASCYTIASLITHMPFLALQALAYAAIVWFALELRGPFIYFFLVLFISLLSTNSFVVFVSSIVPNYILGYAAVIAFTALFFLFCGYFLSSEDIPLYWRWMNKVSTMTYPYEGLLMNEYQTNETFGSNDGVSITGFDILKSLHIGTEEIKKRNNVLIMLGWAVLYRILFYIILRFASKNQRS* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1274 727 SMART AAA_5 61 259 IPR003593 -
Mtr5g1274 727 CDD ABCG_EPDR 25 257 - -
Mtr5g1274 727 Gene3D - 25 271 IPR027417 -
Mtr5g1274 727 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 275 IPR003439 GO:0005524
Mtr5g1274 727 Pfam ABC transporter 52 203 IPR003439 GO:0005524
Mtr5g1274 727 PANTHER ABC TRANSPORTER G FAMILY MEMBER 19 7 721 - -
Mtr5g1274 727 ProSitePatterns ABC transporters family signature. 175 189 IPR017871 GO:0005524
Mtr5g1274 727 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 721 - -
Mtr5g1274 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 269 IPR027417 -
Mtr5g1274 727 Pfam ABC-2 type transporter 232 288 IPR043926 GO:0140359
Mtr5g1274 727 Pfam ABC-2 type transporter 459 664 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1274 Mtr-Chr5 13142109 13146238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1274 14 289 Calmodulin-binding Proteins AT2G36910 28.622 5.99e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1274 K05681 - gmx:100804809 1170.61