Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1268 ATGGAACTTTCTCAACTTGGTTTTCTTGAGGAGCTACTAGCTCCAAGAAAAGACACATGGAATACTTTATCCACTGGTTTGAATGAGTTACTACTCCCTAATGGTTGGACCTTTGACTCATTTGATGAAAATCTTCTCATCAATCCATCTTTAAACCCTTCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCATCATCATTATCATACCCTTATCTTGATGGATTCTCAGTTCCAGAGTTTGATGATTCAGCACCAGTTTTACCACAACAAGAAAGTATTGAAGAGTTTGGATTTGTTGGAAGTGAGAACAAGAGGTTTGAAGAGAGTAAAATCAGCTGCAAAGTTGAGGAACAAGTTAGTGAGACACCAGTTTTTAACATGGGTTTGTGTGGTGAGAAAAAAGCCAAATCCAAAAGGGTTGAAGGACAGCCTTCAAAGAATCTTATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGACAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGCAAGATGGACAGGACATCAATTCTTGGAGATACAATTGATTACATGAAAGAGCTTCTAGAAAGGATTAGTAAGTTACAAGAAGAAATAGAGAAAGAAGGAACAAATCAGATAAACCTTTTAGGAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGTTTGATGTTGAGAGGAGAGACCAGGACACAAGAATCAGTATCTGCTGTGCCACAAAGCCAGGATTGTTACTGTCAACAGTGAACACATTAGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTAGCTGGTCAGAGAAATTGTATGAACCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGGAGATGTCTCTAG 960 0.3833 MELSQLGFLEELLAPRKDTWNTLSTGLNELLLPNGWTFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDASSLSYPYLDGFSVPEFDDSAPVLPQQESIEEFGFVGSENKRFEESKISCKVEEQVSETPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEIEKEGTNQINLLGISKELKPNEVMFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVAGQRNCMNPEEIKQSLFRNAGYGGRCL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1268 319 Pfam Helix-loop-helix DNA-binding domain 158 201 IPR011598 GO:0046983
Mtr5g1268 319 Coils Coil 198 218 - -
Mtr5g1268 319 Gene3D - 142 217 IPR036638 GO:0046983
Mtr5g1268 319 SMART finulus 158 207 IPR011598 GO:0046983
Mtr5g1268 319 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 319 - -
Mtr5g1268 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 319 - -
Mtr5g1268 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 215 IPR036638 GO:0046983
Mtr5g1268 319 CDD ACT_UUR-ACR-like 245 286 - -
Mtr5g1268 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1268 Mtr-Chr5 13058561 13060845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1268 11 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.994 2.30e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g1268 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1268 - - gmx:100806571 507.679