Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1266 ATGTCTCCGACGGCTGTGGTTACGGAGGACGAAGGGCGGCGCAAACTGTCGTCGACGATGGAACGGAATTACTTGGGATTGTCTGATTGTTCATCGGTGGACAGTTGTGATTCAACTCTCCCAAGTTTGTGTGATGAGAAAAAAGTGAACTTGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCACCCGAGAGGGAAATGGATTCGGATTTTTACTTAACAAAGCTTGATGAGAAACCATTGTTCCCTTTACTTCCTGCAAAAGATGGTTTGCAGAAGAATGTGGTTTCGGGGAATAAGAGAGGATTTGCTGATACCGTTGATGGGTTTTCTCAGGGTAAGTTTAATGGTAATACGGGGATTAACGTGATGCTATCGCCTAGACCTGCTGGAGCTCAGGCGAGCACAGTGAAAGAAATGCCGAGTAAGGTTTTGCAGGAAAGGCCTTGTGCAGCTAGAGGAACTGCTGGTCATAATCATGCAGGTGCTGCTTCTGTCGCTGGTTGTGCACCGGCATCAAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCAATGGCCACCGCTTCCAAGAACAACAATGATGAAGTGGATGGAAAACCAGGTCCCGCTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTCGATCTAAGAACTTATGCAACATATCAGCAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGCCAGTGTGGTTCCCATGGTGCTCCAGGAAAAGAAATGATGAGTGAGAGCAAGCTGAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGACGTACCATGGGAGATGTTCATTGATACTTGCAGAAGGCTGAAAATCATGAAGGGTTCTGACGCCATTGGGTTAGCTCCCAGGGCCATGGAGAAGTCCAAAAGCAGGAGTTAG 1008 0.4663 MSPTAVVTEDEGRRKLSSTMERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPEREMDSDFYLTKLDEKPLFPLLPAKDGLQKNVVSGNKRGFADTVDGFSQGKFNGNTGINVMLSPRPAGAQASTVKEMPSKVLQERPCAARGTAGHNHAGAASVAGCAPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRTYATYQQLSSALEKMFSCFTLGQCGSHGAPGKEMMSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKSKSRS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1266 335 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 328 IPR003311 GO:0005634|GO:0006355
Mtr5g1266 335 Gene3D - 212 329 - -
Mtr5g1266 335 Pfam AUX/IAA family 56 326 IPR033389 -
Mtr5g1266 335 SUPERFAMILY CAD & PB1 domains 213 316 - -
Mtr5g1266 335 ProSiteProfiles PB1 domain profile. 215 319 IPR000270 GO:0005515
Mtr5g1266 335 PANTHER AUXIN-INDUCED PROTEIN 15 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1266 Mtr-Chr5 13031269 13036750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1266 217 320 B3 DNA Binding Superfamily AT5G37020 30.769 2.57e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr5g1266 AUX_IAA 2.6e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1266 K14484 - gmx:547502 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1266 5 13031269 13036750 Mtr8g2074 8 30674644 30679938 PCT