Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1253 ATGAATCTTTGGAGCGACGATAACTCTTCAGTAATGGAGGCTTTCATGACCTCCTCTGATTTATCAACCTTATGGCCACCACAACCACCGTCACAACCACCACAAACCACCACCGGATTCAACCAAGACACTCTCCAACAACGTCTTCAGGCTTTAATCGAAGGTGCAAAAGAAATCTGGACCTACGCTATTTTCTGGCAACCTTCTTACGACTATTCAGGTTCTTCGTTACTCGGTTGGGGTGACGGCTACTATAAAGGCGAAGAAGACAAAACAAAAGCGAAGAAATCAAAAGTTACTTCACCTGCTGAACAAGAACACCGGAGAAAAGTTCTTAGAGAACTTAATTCATTAATCTCCGGTAATCCGGTTACAGATGAATCTCCTGTTGATGAAGAAGTTACTGATACGGAGTGGTTCTTTTTAGTTTCTATGACGCAGTCTTTTGTTAACGGAACTGGACTGCCTGGACAAGCTTATTATAATTCAGCTCCGGTGTGGCTAACTGGAGCTGAAAATCTCGCCCTCTCAGCTTGTGAGAGGGCGAGGCAAGGTCAAGAACATGGTATACAGACGCTGGCGTGTATACGGTCGGCTGACGGTGTTTTGGAGCTTGGATCTACTGAGTTGATTTATCAGAATAATGATTTGATGAATAAAGTGAAGATGCTTTTCAATTTTAACAATAATTTTGATTTTGGATCTTCATGGCAGTTAGGTAATAATTCTGCTGCTACAATTGGTGGTAATCAAGGTGAGAATGATCCTTCTTTGAATTGGATCAACGATCCTGAAGCTCGAGATTCTGTTGATAATAATTCTCTTGTTACAACAACAACGGCAGCAACAAATGCTTCAATCTCAGTTCCAAGTCACCAACATCACAACAATAATCAGAATTTGAGTGTGAGTGTTACGAAGACGATGCAATTTGAAACTCATGGTTCGAGTACTTTAACTGAGGTTCCCAGTGTTGTTCATGTTTCAAGCAAGCAAAATAATCAAAGTTTCTTTTCTAAGGAAATGAATCTTTCTGATTATGGTGGGAGTAACAATCAGCAACGTTTGTTGAAGCCTGAATCCGGTGATATTTTGTGTTTTGGTGAGAGTAAAAAGAGTTCTTATGTTGCTAATAATGGAAACTCGAATTCGAATTTTTTCTCTGGTCAATCACAGTTAGTTTCTGTTGCTGAGGAGAATAATAATGGGAACGGGAATGGAAATGGAAAGAGGAGATCACCGAATTCGAGAGGAAGTAATAATGATGATGGAATGCTATCTTTTACTTCTGGTGTAATTGTTCCACCGGCTACTTCAAATTTGAAATTCTCTGGTGGTACTGGTGGTGGTGATTCAGACCATTCGGATCTGGAGGCTTCGGTGGTGAAGGAGGTGGATAGTAGTCGTGTGGTGGAGCCCGAAAAGAAGCCGAGGAAGAGAGGGAGGAAGCCGGCAAACGGAAGAGAGGAACCGTTGAATCATGTTGAAGCTGAGAGGCAAAGAAGAGAGAAGCTGAATCAGAGATTCTATGCACTTCGAGCGGTTGTTCCTAATGTTTCAAAGATGGACAAAGCTTCACTTTTGGGTGATGCTATATCTTACATTACTGAGTTGAAAACAAAGCTTCAGAAAACTGAATCTGATAAAGATGGATTAGAAAAGCAACTTGATGGGATGAAGAATGAAATTCAGAAAATCAACGAAAACCAGTCTCATCAGCCACCACAACAGCAGCAACAACAACAGCCAATACCGAATAAACCCTCTTCGAATCAAGCTCTAATCGATTTAGATATCGACGTGAAGATTATAGGTTGGGATGCAATGATAAGGGTCCAATGCAGTAAGAAAAACCACCCTGCAGCGAGGTTAATGGCAGCGTTAATGGAGCTTGACCTAGAAGTGCACCATGCCAGTGTGTCTGTGGTAAATGATTTGATGATACAACAAGCAACCGTGAAAATGGGGAGTCGTTTTTACACTCAGGAGCAGCTTCGAGCGGCATTGTCCTCTAAAGTCGGGGATGTTCAATAA 2034 0.4164 MNLWSDDNSSVMEAFMTSSDLSTLWPPQPPSQPPQTTTGFNQDTLQQRLQALIEGAKEIWTYAIFWQPSYDYSGSSLLGWGDGYYKGEEDKTKAKKSKVTSPAEQEHRRKVLRELNSLISGNPVTDESPVDEEVTDTEWFFLVSMTQSFVNGTGLPGQAYYNSAPVWLTGAENLALSACERARQGQEHGIQTLACIRSADGVLELGSTELIYQNNDLMNKVKMLFNFNNNFDFGSSWQLGNNSAATIGGNQGENDPSLNWINDPEARDSVDNNSLVTTTTAATNASISVPSHQHHNNNQNLSVSVTKTMQFETHGSSTLTEVPSVVHVSSKQNNQSFFSKEMNLSDYGGSNNQQRLLKPESGDILCFGESKKSSYVANNGNSNSNFFSGQSQLVSVAEENNNGNGNGNGKRRSPNSRGSNNDDGMLSFTSGVIVPPATSNLKFSGGTGGGDSDHSDLEASVVKEVDSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQKTESDKDGLEKQLDGMKNEIQKINENQSHQPPQQQQQQQPIPNKPSSNQALIDLDIDVKIIGWDAMIRVQCSKKNHPAARLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1253 677 MobiDBLite consensus disorder prediction 398 446 - -
Mtr5g1253 677 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 225 IPR025610 -
Mtr5g1253 677 MobiDBLite consensus disorder prediction 569 591 - -
Mtr5g1253 677 Gene3D - 481 570 IPR036638 GO:0046983
Mtr5g1253 677 PANTHER TRANSCRIPTION FACTOR MYC2 39 674 - -
Mtr5g1253 677 MobiDBLite consensus disorder prediction 19 40 - -
Mtr5g1253 677 Coils Coil 535 569 - -
Mtr5g1253 677 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 489 538 IPR011598 GO:0046983
Mtr5g1253 677 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 492 557 IPR036638 GO:0046983
Mtr5g1253 677 PANTHER MYC 39 674 IPR045084 GO:0003700|GO:0006355
Mtr5g1253 677 SMART finulus 495 544 IPR011598 GO:0046983
Mtr5g1253 677 MobiDBLite consensus disorder prediction 456 499 - -
Mtr5g1253 677 CDD bHLH_AtAIB_like 486 562 - -
Mtr5g1253 677 MobiDBLite consensus disorder prediction 398 499 - -
Mtr5g1253 677 Pfam Helix-loop-helix DNA-binding domain 493 538 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1253 Mtr-Chr5 12882336 12884972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1253 1 674 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 51.545 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g1253 bHLH-MYC_N 3.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1253 K13422 - gmx:100790168 806.594