Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1239 ATGGCAATTGAAAATCAAGAAAATACCAGTGTCAGAGAAATCAAACCAAAGAACAGGAGAATCATGGGTGCTGGAGGACCTGATGATGATGATAACAGATGGCCACCATGGTTGAAACCATTGTTGAAAGAAGCTTTCTTTGTTCAATGCAAGATACATGCTGATTCTCACAAGAGTGAATGTAACATGTATTGTTTGGATTGTATGAATGGTCCTCTTTGTTCTCTCTGTCTTGCTTATCACAAAGACCACCGTTACATTCAGATTAGGAGGTCTTCATACCATGATGTGATAAGGGTGAATGAGATTCAGAAACACTTGGACATTGCTGGTGTTCAAACCTACATTATCAACAGTGCAAGGGTTGTGTTTTTGAATGAAAGGCCTCAACCAAGGCCAGGGAAAGGTGTCACAAACACTTGTGAAGTTTGTGAGCGTAGCCTTCTTGATTCCTTCCGGTTCTGTTCTCTTGGTTGCAAGATTGTGGGGACATCTAAGAACTTCCAGAAGAAAAAGAGACATTTAACAGCAATGGCATCAGATTCTGAGGAGTCATACAGTAGCAACAACATTCATAGCCGTCAGAAGAAAATCAAAGTTCAAAGCTTCACACCATCTACACCACCCCCAACTTCAGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACATAGAGCCCCATTGGGGGGACTTGATGTAGATTATTATTTGCTATAA 723 0.408 MAIENQENTSVREIKPKNRRIMGAGGPDDDDNRWPPWLKPLLKEAFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKKRHLTAMASDSEESYSSNNIHSRQKKIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDVDYYLL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1239 240 MobiDBLite consensus disorder prediction 179 215 - -
Mtr5g1239 240 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 232 - -
Mtr5g1239 240 Pfam PLATZ transcription factor 90 161 IPR006734 -
Mtr5g1239 240 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 232 - -
Mtr5g1239 240 MobiDBLite consensus disorder prediction 10 28 - -
Mtr5g1239 240 MobiDBLite consensus disorder prediction 1 28 - -
Mtr5g1239 240 CDD Bbox2 50 89 - -
Mtr5g1239 240 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1239 Mtr-Chr5 12713745 12716016 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Mtr5g1239 PLATZ 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1239 - - gmx:100791221 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1239 5 12713745 12716016 Mtr5g1239 5 12713745 12716016 ECH
Mtr5g1239 5 12713745 12716016 Mtr8g2053 8 30379591 30382904 PCT